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Oligonucleotide Conjugation Services

In the rapidly evolving field of nucleic acid-based research, oligonucleotide conjugation has become an indispensable strategy to enhance molecular functionality, specificity, and delivery. BOC Sciences, with over two decades of specialized experience in biochemical solutions, provides scientifically rigorous and customizable oligonucleotide conjugation services tailored to meet the diverse needs of preclinical drug development, molecular diagnostics, and functional genomics. By leveraging state-of-the-art conjugation chemistries, proprietary linkers, and a robust understanding of biocompatibility, we ensure precise and reproducible modifications that meet the highest standards of quality and innovation.

Why is Oligonucleotide Conjugation Important?

Why is Oligonucleotide Conjugation Important

Oligonucleotide conjugation is a transformative strategy that elevates the performance and versatility of synthetic nucleic acids in preclinical applications. By covalently attaching functional molecules to oligonucleotides, researchers gain precise control over pharmacodynamics, delivery efficiency, and functional readout. The importance of oligonucleotide conjugation is underscored by several critical advantages:

  • Improved pharmacokinetics through PEGylation or lipid addition
  • Targeted delivery via GalNAc, antibodies, or homing peptides
  • Cellular penetration by conjugating with CPPs or nanoparticles
  • Enhanced detection and imaging using fluorescent dyes or quantum dots
  • Stimulus-responsiveness through pH- or redox-sensitive linkers

By integrating targeting specificity, delivery enhancement, and functional adaptability, oligonucleotide conjugation transforms synthetic nucleic acids from passive strands into intelligent molecular tools. For researchers aiming to push the boundaries of nucleic acid science, conjugation is not just beneficial—it is essential.

Comprehensive Oligonucleotide Conjugation Services for You to Choose

At BOC Sciences, we recognize the diverse and evolving needs of researchers working with miRNAs. To meet these demands, we provide a full spectrum of tailored miRNA synthesis services designed to support a variety of experimental objectives and biological models. Our offerings encompass chemically synthesized oligonucleotides, advanced chemical modifications, functional mimics and inhibitors, as well as vector-based delivery systems, enabling precise modulation of miRNA activity with optimal stability and specificity.

Service CategoryConjugation Targets Features Applications Prices
Peptide-Oligonucleotide ConjugationFunctional peptides (nuclear localization signals, mitochondrial targeting sequences), etc.Linker flexibility and cleavage options allow tunable release profiles.
  • Subcellular targeting for antisense or gene regulation tools.
  • Biomarker-activated therapeutic switches.
Inquiry
Antibody-Oligonucleotide ConjugationMonoclonal antibodies (IgG1, IgG2a), Fab fragments, scFvs, etc.Site-specific conjugation (e.g., to hinge-region cysteines) to retain antibody binding activity.
  • Immuno-PCR and immuno-RCA signal amplification.
  • Cell-specific delivery of siRNA or ASOs in receptor-overexpressing models.
  • Targeted ex vivo labeling and sorting.
Inquiry
GalNAc-Oligonucleotide ConjugationTriantennary N-acetylgalactosamine clusters, etc.Rigid trivalent architectures to optimize receptor binding affinity.
  • Targeted delivery to hepatocytes via ASGPR (asialoglycoprotein receptor).
  • Widely used in liver-targeted RNAi therapeutics.
Inquiry
Antibiotic-Oligonucleotide ConjugationVancomycin, Kanamycin, Tetracycline, Ciprofloxacin, etc.Tailored linker chemistries maintain antibiotic bioactivity while ensuring oligonucleotide integrity and orientation.
  • Development of antimicrobial hybrid molecules.
  • Enhanced delivery of antisense oligos to bacterial cells.
  • Study of antibiotic-oligo synergy in resistance modulation.
Inquiry
Antioxidant-Oligonucleotide ConjugationGlutathione (GSH), Ascorbic Acid, α-Tocopherol, etc.Custom redox-sensitive linkers to enable GSH-triggered release.
  • Protection of oligonucleotides from oxidative degradation.
  • Use in oxidative stress models.
  • Stimuli-responsive systems where antioxidants act as release triggers.
Inquiry
Cell-Penetrating Peptide-Oligonucleotide ConjugationTAT, Penetratin, Transportan, Pep-1, R9, etc.Modular designs allow multivalency or cleavable peptide-oligo constructs.
  • Enhancing cytosolic and nuclear delivery of siRNAs, aptamers, and splice-switching oligos.
  • Delivery into hard-to-transfect cells (e.g., neurons, primary cells).
Inquiry
Enzyme-Oligonucleotide ConjugationHorseradish peroxidase (HRP), Alkaline phosphatase, β-galactosidase, etc.Oriented conjugation to maintain enzymatic activity post-coupling.
  • DNA-enzyme nanodevices for biosensing and diagnostics.
  • Catalytic signal amplification for nucleic acid detection.
Inquiry
Exosome-Oligonucleotide ConjugationCD63-binding aptamers, lipid-anchored oligos, electroporated oligonucleotides, etc.

Integration strategies via covalent tagging or membrane insertion.

  • Engineering exosomes as carriers for miRNA, siRNA, and ASO delivery.
  • Functional studies on extracellular vesicle (EV) communication
Inquiry
Fluorescent Molecule-Oligonucleotide ConjugationFAM, Cy3, Cy5, Alexa Fluor 488/568/647, TAMRA, etc.High-labeling efficiency with spacing control to avoid quenching.
  • Real-time tracking of oligonucleotide uptake and trafficking.
  • FRET-based probes for conformational changes or cleavage detection.
  • Multiplex PCR and fluorescence hybridization assays.
Inquiry
Glycomimetic-Oligonucleotide ConjugationSialic acid analogs, mannose mimics, fucose derivatives, etc.Precise stereochemistry control for ligand presentation.
  • Lectin-mediated uptake in dendritic cells or tumor models.
  • Immune system targeting or modulation.
Inquiry
Homing Peptide-Oligonucleotide ConjugationRGD peptides (integrin targeting), NGR peptides (CD13 targeting), CREKA (tumor vasculature targeting), etc.Dual payload conjugates (imaging + therapeutic) are available.
  • Tumor or organ-specific delivery of siRNAs or antisense oligos.
  • Imaging of angiogenesis-related targets using labeled oligo-peptide constructs.
Inquiry
Lipids-Oligonucleotide ConjugationCholesterol, stearic acid, DSPE-PEG derivatives, etc.

Hydrophobic modifications improve serum stability and biodistribution.

  • Enhanced endosomal escape and membrane fusion.
  • Integration into lipid nanoparticles (LNPs) for systemic delivery.
Inquiry
Metal Chelates-Oligonucleotide ConjugationDOTA, NOTA, DTPA, EDTA, etc.Suitable for both diagnostic (PET/SPECT) and theranostic probes.
  • Radiolabeling with isotopes (e.g., 111In, 64Cu, 68Ga) for in vivo imaging.
  • Metal-mediated oligo folding or catalysis studies.
Inquiry
Nanoparticle-Oligonucleotide ConjugationGold nanoparticles, silica NPs, carbon dots, lipid NPs, etc.

Optimized surface density and orientation for hybridization performance.

  • Biosensor design (colorimetric and electrochemical).
  • Nanocarrier-based delivery systems with controlled oligo loading.
Inquiry
Polymer-Oligonucleotide ConjugationPEG, PCL, PLGA, PNIPAM, etc.

Biocompatible polymers tailored for degradation and release kinetics.

  • Controlled release formulations and injectable hydrogels.
  • Thermoresponsive or pH-responsive delivery systems.
Inquiry
Protein-Oligonucleotide ConjugationTranscription factors, nucleases, fluorescent proteins (e.g., GFP), albumin, etc.

Site-selective conjugation with preservation of native protein activity.

  • Functional genomics studies and protein-DNA interaction analysis.
  • Enhanced pharmacokinetics through albumin binding.
Inquiry
Quantum Dot-Oligonucleotide ConjugationCdSe/ZnS QDs, graphene QDs, carbon QDs, etc.

Size-tunable fluorescence emission from blue to near-IR.

  • Multiplexed bioimaging with photostable and bright signals.
  • Single-molecule tracking in living cells.
Inquiry
Small Molecule-Oligonucleotide ConjugationDexamethasone, doxorubicin, folate, biotin, etc.

Controlled drug-to-oligo ratios with validated release profiles.

  • Targeted delivery using receptor ligands (e.g., folate receptor).
  • Small-molecule-triggered activation or cleavage.
Inquiry
Stimulus-Responsive Oligonucleotide ConjugationpH, ROS, redox potential, enzymes (e.g., MMPs), etc.

Modular responsive linkers designed for tumor, inflammatory, or intracellular environments.

  • On-demand release of oligonucleotides in specific microenvironments.
  • Design of responsive molecular logic circuits or switches.
Inquiry
Virus-Like Particle-Oligonucleotide ConjugationQβ VLP, MS2 VLP, plant-based VLPs, etc.

High-density surface conjugation or encapsulation options.

  • Gene delivery systems with biomimetic architecture.
  • Vaccine research using nucleic acid adjuvants.
Inquiry

Comprehensive Oligonucleotide Types for You to Choose

At BOC Sciences, we recognize that successful conjugation depends heavily on the nature and integrity of the oligonucleotide itself. That’s why we provide a broad spectrum of oligonucleotide types tailored for diverse research applications and conjugation strategies. Whether your project focuses on gene silencing, molecular imaging, cell targeting, or delivery optimization, our synthesis and customization capabilities ensure the optimal oligo format for your application.

The success of oligonucleotide conjugation hinges not only on the conjugate chemistry but also on the compatibility, purity, and customization of the oligonucleotide itself. At BOC Sciences, we combine industry-grade oligo manufacturing with advanced functionalization, delivering fully conjugation-ready oligonucleotides for your preclinical innovation.

Unlock the Full Potential of Oligonucleotide Conjugation

Engage with our seasoned experts for advanced, scalable, and customized conjugation solutions
— designed to meet the most stringent scientific demands.

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Comprehensive Oligonucleotide Conjugation Strategies for You to Choose

BOC Sciences provides a diverse portfolio of chemically robust and biologically compatible conjugation strategies designed to precisely link oligonucleotides with a broad array of functional moieties. Our oligonucleotide conjugation methods are optimized for high efficiency, reproducibility, and scalability to meet the exact demands of preclinical R&D in biotechnology, diagnostics, and drug development.

Amide Bond Formation

This is a widely used and highly reliable method to link oligonucleotides to molecules bearing carboxyl or amine groups. By incorporating amino-modified oligonucleotides, we facilitate covalent attachment to:

  • Peptides
  • Proteins
  • Small molecule drugs

This method provides a stable and bioresistant linkage, well-suited for in vivo studies.

Thiol-Maleimide Conjugation

The thiol-maleimide click reaction is a selective and biocompatible approach used extensively for attaching oligos to:

  • Antibodies
  • Enzymes
  • Nanoparticles

Thiol-modified oligonucleotides react specifically with maleimide-functionalized molecules under mild conditions, preserving the activity of both the oligo and the conjugate.

Click Chemistry (CuAAC & SPAAC)

Copper(I)-catalyzed azide-alkyne cycloaddition (CuAAC) and strain-promoted azide-alkyne cycloaddition (SPAAC) are efficient “click” methods for oligonucleotide conjugation. Features include:

  • Orthogonality to biological systems
  • High yield and regioselectivity
  • Compatibility with a wide range of biomolecules

These methods are ideal for constructing multifunctional or modular oligonucleotide conjugates.

Disulfide Bond Formation

Reversible disulfide linkages allow cleavable conjugation, ideal for:

  • Controlled intracellular release
  • Redox-sensitive delivery systems

We offer oligonucleotides modified with thiol groups that can form disulfide bonds with appropriate targets such as peptides or proteins.

EDC/NHS Chemistry

Using 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC) and N-hydroxysuccinimide (NHS), we enable direct activation of carboxyl groups to form amide bonds with primary amines on oligonucleotides or payloads. This method is:

  • Economical and efficient
  • Widely applied in peptide and protein–oligo conjugation

Oxime and Hydrazone Linkage

These bioorthogonal reactions between aldehyde/ketone-modified oligonucleotides and aminooxy/hydrazide groups yield:

  • Stable or cleavable linkages
  • High specificity

This method is often selected for conjugation with biomolecules sensitive to harsh chemical environments.

NHS-Ester/Amine Coupling

A commonly used approach to conjugate oligonucleotides to amine-bearing ligands, proteins, or polymers. The high reactivity and aqueous compatibility of NHS esters make this method particularly suitable for:

  • Fluorescent labeling
  • Drug delivery formulations
  • Diagnostic probes

Streptavidin–Biotin Conjugation

One of the strongest known non-covalent interactions, this method enables:

  • Fast and reversible conjugation
  • High-affinity capture and detection
  • Modular assembly of oligo–protein or oligo–nanoparticle systems

We provide both biotinylated oligonucleotides and streptavidin-functionalized carriers for customized applications.

Carbodiimide-Mediated Coupling

We use water-soluble carbodiimides to activate carboxyl-containing molecules, enabling direct conjugation to amine-modified oligos. This is a preferred approach when:

  • A strong, covalent bond is required
  • Other functional groups must remain intact

Enzymatic Conjugation Techniques

Where gentle conditions and site specificity are paramount, we offer enzymatic labeling using ligases or transferases. These include:

  • Terminal deoxynucleotidyl transferase (TdT) labeling
  • Sortase-mediated ligation

This approach supports applications in biosensing, enzymatic amplification systems, and bioconjugate vaccines.

Photoreactive Conjugation

For applications demanding spatial and temporal control, we offer UV-triggered conjugation using photo-crosslinkable moieties (e.g., aryl azides, diazirines). This is suitable for:

  • Crosslinking studies
  • Surface immobilization of oligonucleotides
  • Time-sensitive functionalization

Solid-Phase Conjugation

We also support on-resin oligonucleotide conjugation, allowing direct synthesis of oligo conjugates on a solid support. This approach enables:

  • Precise control of conjugation stoichiometry
  • Parallel synthesis for high-throughput formats
  • Enhanced purity of final product

BOC Sciences delivers full-spectrum conjugation services with expert consultation, ensuring that your selected oligonucleotide type is paired with the optimal conjugation method for your biological target, delivery platform, and analytical endpoint. Our methods are validated and scalable—ready to transition from proof-of-concept to advanced preclinical models.

Step-by-Step Process of Oligonucleotide Conjugation Services

BOC Sciences employs a rigorous and highly controlled workflow to ensure the production of oligonucleotide conjugates with superior quality, reproducibility, and functionality. Each step integrates advanced chemistry and analytical techniques to meet the precise demands of preclinical research.

1 Project Consultation and Feasibility Assessment

  • Comprehensive evaluation of the oligonucleotide structure, conjugation target, and intended biological application.
  • Selection of optimal conjugation chemistry (e.g., click chemistry, maleimide-thiol, NHS ester coupling) tailored to the oligonucleotide’s functional groups and the conjugate moiety’s chemical nature.
  • Design of linker strategies to balance stability, release kinetics, and biological compatibility.

2 Oligonucleotide and Conjugate Preparation

  • Custom synthesis or procurement of the oligonucleotide with reactive handles (e.g., amine, thiol, azide) introduced site-specifically.
  • Synthesis or modification of the conjugate ligand or carrier molecule, ensuring functional group availability and purity.

3 Optimization of Conjugation Reaction Conditions

  • Fine-tuning parameters such as solvent system, pH, temperature, molar ratios, and reaction time to maximize conjugation efficiency and minimize side reactions.
  • Pilot-scale reactions performed to validate protocol scalability and reproducibility.

4 Conjugation Execution

  • Execution of the bioconjugation reaction under controlled conditions, employing chemoselective ligation methods to achieve site-specific and stable linkages.
  • Use of protective groups or orthogonal chemistries where dual or multifunctional conjugation is required.

5 Purification and Isolation

  • Application of high-resolution chromatographic techniques such as HPLC or size-exclusion chromatography to separate the conjugated oligonucleotide from unreacted starting materials, side products, and impurities.
  • Optimization of purification methods to retain oligonucleotide integrity and conjugate functionality.

6 Comprehensive Analytical Characterization

  • Verification of conjugate identity and purity using LC-MS, MALDI-TOF mass spectrometry, UV-Vis spectroscopy, and gel electrophoresis.
  • Quantitative assessment of conjugation efficiency and degree of labeling through spectrometric and chromatographic analysis.

7 Quality Control and Documentation

  • Rigorous quality control protocols ensure batch-to-batch consistency and compliance with client specifications.
  • Delivery of detailed analytical reports, certificates of analysis (CoA), and technical datasheets alongside the conjugate product.

8 Technical Support and Post-Delivery Consultation

  • Ongoing collaboration to support application-specific challenges and optimize conjugate use in downstream assays.
  • Customized troubleshooting and modification services based on experimental feedback.

Through this meticulous and integrated process, BOC Sciences ensures that every oligonucleotide conjugate meets the highest standards for preclinical research and development applications.

Why Choose Our Oligonucleotide Conjugation Services?

Selecting BOC Sciences for oligonucleotide conjugation ensures a partnership grounded in scientific rigor, innovation, and customer-focused precision. Our service advantages distinctly position us as a leader in the preclinical bioconjugation landscape:

Advanced Technical Expertise: Leveraging over 20 years of experience, we apply state-of-the-art conjugation methods—including click chemistry and site-specific techniques—to deliver stable, functional oligonucleotide conjugates.

Customized Conjugation Strategies: Each project is designed to fit your unique experimental needs, optimizing linker chemistry and conjugate properties for enhanced target engagement and delivery.

Wide Range of Conjugation Options: From antibodies and peptides to nanoparticles and stimulus-responsive groups, our comprehensive portfolio supports diverse research applications, streamlining your workflow under one provider.

Strict Quality Control: Our rigorous purification and characterization processes—using HPLC, mass spectrometry, and spectroscopy—ensure consistent purity, structure, and conjugation efficiency.

Efficient Integrated Workflow: Seamless coordination from oligonucleotide synthesis to final conjugation accelerates turnaround times, enabling faster project progress without sacrificing quality.

Through this combination of scientific mastery, bespoke customization, comprehensive analytical rigor, and dedicated client service, BOC Sciences stands as the premier choice for oligonucleotide conjugation services designed to elevate your preclinical research capabilities.

Applications of Oligonucleotide Conjugation Services

Oligonucleotide conjugation profoundly enhances the functionality and versatility of oligonucleotides, enabling their application across a wide spectrum of advanced scientific and therapeutic research areas. The conjugation services offered by BOC Sciences empower researchers to tailor oligonucleotide molecules to meet specific experimental needs, driving innovation and improving efficacy in preclinical studies.

Targeted Drug Delivery and Therapeutics

Targeted Drug Delivery and Therapeutics

Conjugating oligonucleotides with targeting ligands such as peptides, antibodies, or GalNAc enables precise delivery to specific cell types or tissues. This targeted approach improves cellular uptake and reduces off-target effects, crucial for gene silencing, antisense, or RNA interference therapies. For example, GalNAc-oligonucleotide conjugates have shown enhanced liver-specific delivery, significantly boosting therapeutic index in preclinical models.

Enhanced Cellular Uptake and Intracellular Trafficking

Enhanced Cellular Uptake and Intracellular Trafficking

The use of cell-penetrating peptides (CPPs) or lipid conjugates dramatically improves the internalization efficiency of oligonucleotides. These conjugates facilitate endosomal escape and intracellular trafficking, overcoming major barriers in nucleic acid delivery. This application is critical for in vitro and in vivo studies requiring robust gene modulation with high efficiency and minimal cytotoxicity.

Diagnostic Imaging and Tracking

Diagnostic Imaging and Tracking

Fluorescent molecule or quantum dot conjugation to oligonucleotides enables real-time tracking and imaging of nucleic acid interactions at the cellular and molecular level. These conjugates serve as powerful tools in molecular diagnostics, enabling visualization of target binding, cellular localization, and dynamics within biological systems.

Biosensing and Molecular Detection

Biosensing and Molecular Detection

Conjugation with metal chelates or nanoparticles facilitates the development of highly sensitive biosensors for detecting nucleic acids, proteins, or small molecules. These conjugates are applied in assays with improved signal-to-noise ratios and enable quantitative analysis of biomarkers relevant to disease research and drug development.

Controlled Release and Stimulus-Responsive Systems

Controlled Release and Stimulus-Responsive Systems

Stimulus-responsive oligonucleotide conjugates allow for triggered release under specific conditions such as pH changes, enzymatic activity, or light exposure. This application is particularly valuable in controlled drug delivery systems, where precise spatiotemporal control of oligonucleotide activity enhances therapeutic outcomes.

Immune Modulation and Vaccine Development

Immune Modulation and Vaccine Development

Virus-like particle (VLP) or exosome conjugation with oligonucleotides offers advanced platforms for vaccine delivery and immune system modulation. These conjugates can enhance antigen presentation and elicit targeted immune responses, serving as innovative tools in immunotherapy and prophylactic vaccine research.

Structural and Functional Studies of Biomolecules

Structural and Functional Studies of Biomolecules

Protein-oligonucleotide or enzyme-oligonucleotide conjugates are instrumental in dissecting biomolecular interactions and mechanisms. Such conjugates facilitate site-specific labeling, activity modulation, or stabilization of nucleic acid-protein complexes, advancing structural biology and enzymology research.

Glycomimetic and Small Molecule Conjugates in Receptor Targeting

Glycomimetic and Small Molecule Conjugates in Receptor Targeting

Conjugation with glycomimetic ligands or small molecules enables the design of oligonucleotides with enhanced receptor specificity and affinity. This approach is vital for targeting cell surface receptors implicated in disease, aiding in the development of novel therapeutic agents with improved bioavailability and reduced toxicity.

Through these diverse applications, BOC Sciences' oligonucleotide conjugation services empower clients to expand the capabilities of nucleic acid-based research tools and therapeutics, accelerating discovery and enhancing preclinical development success.

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