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Custom Oligo Probe Pools for Advanced Genomics

We specialize in designing and manufacturing custom oligonucleotide probe pools tailored for advanced genomic applications. Whether your project involves targeted sequencing, gene expression profiling, CRISPR screening, or rare variant detection, our high-fidelity synthesis technology ensures maximum specificity, sensitivity, and reproducibility. With end-to-end customization-from probe design to synthesis and quality validation-we deliver solutions that accelerate research breakthroughs while meeting the highest industry standards.

What are Oligonucleotide Probe Pools?

Oligonucleotide probe pools (oligo pools) are high-complexity, synthetic DNA libraries designed for diverse applications in genomics, synthetic biology, and molecular diagnostics. These pools consist of thousands to millions of unique oligonucleotides synthesized in parallel, enabling cost-effective and scalable solutions for gene synthesis, CRISPR guide RNA libraries, fluorescence in situ hybridization (FISH), and targeted sequencing. Our custom oligo pools are manufactured using high-fidelity chip-based synthesis and next-generation quality control, ensuring high accuracy and uniformity. With flexible design options, researchers can tailor oligo pools for gene assembly, pathway engineering, or high-resolution genomic imaging.

Problems We Solve

Low Sensitivity in Rare Variant Detection: Detecting low-frequency genetic variants is often hindered by inadequate probe design and synthesis quality. Our optimized custom oligonucleotide probe pools enhance hybridization efficiency, enabling precise detection of rare alleles even in complex genomic backgrounds.

Off-Target Hybridization and Background Noise: Non-specific binding can compromise sequencing accuracy and inflate data noise. We employ advanced bioinformatics and stringent sequence filtering to minimize off-target interactions, ensuring high specificity and reliable results.

Time-Consuming Probe Development: Traditional probe development workflows can delay research timelines. With streamlined design-to-delivery processes and automated synthesis platforms, we significantly reduce turnaround time without sacrificing quality.

Batch-to-Batch Inconsistency: Variability in probe performance between production batches can lead to irreproducible results. Our manufacturing protocols maintain strict quality control, delivering consistent performance across every batch.

Scalability Challenges for Large Genomic Panels: Expanding from small-scale to large-scale projects often increases cost and complexity. Our scalable synthesis capabilities support both small pilot studies and high-throughput genomic applications cost-effectively.

Our Custom Oligonucleotide Probe Pools Service

Custom Design & Consultation

Tailored sequence design using bioinformatics analysis to ensure optimal coverage and target specificity.

High-Throughput Probe Synthesis

Scalable manufacturing for small pilot studies or large-scale genomic programs.

Flexible Modifications

Options for labeling, chemical modifications, or specialized chemistries to meet assay requirements.

Stringent Quality Control

QC via mass spectrometry, HPLC, and NGS-based validation to ensure sequence accuracy and purity.

Fast Turnaround

apid production cycles without compromising quality.

Global Shipping

Reliable delivery to research institutions and companies worldwide.

Step-by-Step Breakdown of Our Oligo Probe Pools Service

1Consultation & Requirement Analysis

We start by discussing your project's goals, target regions, and performance requirements. Our technical experts evaluate your needs and recommend the most suitable probe design strategy.

2Bioinformatics-Driven Probe Design

Using advanced design algorithms, we create oligonucleotide sequences with optimal coverage, GC content, and minimal off-target potential.

3Probe Synthesis & Modifications

We synthesize the custom probe pools with your chosen modifications—such as fluorophores, biotin labels, or chemical backbones—tailored to your assay.

4Rigorous Quality Control

Every batch undergoes stringent QC processes, including mass spectrometry, HPLC, and sequencing validation to ensure purity and accuracy.

5Packaging & Delivery

Probes are carefully packaged under controlled conditions and shipped worldwide with complete documentation and performance reports.

6Technical Support

Our team provides ongoing technical assistance for troubleshooting, optimization, and scaling up to meet evolving research demands.

Key Features & Benefits

  • High Complexity & Precision: Supports libraries containing thousands to millions of unique sequences with minimal synthesis errors.
  • Cost-Effective Scaling: Ideal for large-scale gene synthesis, mutagenesis studies, and CRISPR screening.
  • Customizable Designs: Adjustable lengths (20–200 nt), modifications (biotin, fluorophores), and sequence optimization for specific applications.
  • Rapid Turnaround: High-throughput synthesis and sequence verification ensure reliable performance.

Applications of Oligo Probe Pools

Synthetic Biology & Gene Assembly

Oligo pools serve as affordable DNA sources for constructing gene libraries, metabolic pathways, and engineered strains [1, 3].

Oligopaint FISH & Genomic Imaging

Designed for high-resolution fluorescence in situ hybridization (FISH), enabling visualization of chromosomal loci and structural variants [2, 6].

CRISPR & Functional Genomics

Custom sgRNA libraries for genome-wide screening and targeted gene editing [4, 5].

Targeted Sequencing & Detection

Multiplexed probe sets for enriching and sequencing small genomic regions or rare variants.

FAQs about Oligo Probe Pools

FAQs about sgRNA Services

Ready to Accelerate Your Genomic Breakthroughs?

Unlock the full potential of your research with our Custom Oligonucleotide Probe Pools—engineered for precision, scalability, and reliability in advanced genomic applications. Whether you're working on targeted sequencing, gene expression profiling, or rare variant detection, our expert team is here to deliver probe solutions tailored to your exact needs.

Contact us today to discuss your project and get a free consultation—because in genomics, precision isn't optional, it's everything.

References

  1. Oligo Pools as an Affordable Source of Synthetic DNA for Cost‐Effective Library Construction in Protein‐ and Metabolic Pathway Engineering - ChemBioChem (2021) - doi: 10.1002/cbic.202100507
  2. OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes – PNAS (2018) – doi: 10.1073/pnas.1714530115
  3. A method for high‐throughput production of sequence‐verified DNA libraries and strain collections – Molecular Systems Biology (2017) – doi: 10.15252/msb.20167233
  4. Scalable amplification of strand subsets from chip-synthesized oligonucleotide libraries – Nature Communications (2015) – doi: 10.1038/ncomms9634
  5. Automated high-throughput DNA synthesis and assembly – Heliyon (2024) – doi: 10.1016/j.heliyon.2024.e26967
  6. Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes – PNAS (2012) – doi: 10.1073/pnas.1213818110
  7. Generation of densely labeled oligonucleotides for the detection of small genomic elements – Cell Reports Methods (2024) – doi: 10.1016/j.crmeth.2024.100840
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