Tel:
Email:

Oligo Analysis & Purification

Precision is the backbone of modern nucleic acid research, where even a single nucleotide error can derail an entire study. At BOC Sciences, we understand the critical role that oligonucleotide quality plays in gene editing, qPCR, antisense therapy development, and other preclinical applications. Our Oligo Analysis & Purification Service is engineered to deliver rigorous analytical precision and ultra-pure oligonucleotides that meet the highest standards of research excellence. Leveraging state-of-the-art instrumentation and decades of biochemical expertise, we provide end-to-end solutions that ensure confidence in every strand.

The Importance of Oligo Analysis & Purification

Oligonucleotides are essential tools in a wide range of scientific applications, from basic research in genomics to cutting-edge gene therapies and CRISPR-based gene editing. The integrity, purity, and quality of oligonucleotides directly influence experimental success, biological activity, and the reproducibility of results. Therefore, meticulous oligo analysis and purification are paramount in ensuring that the oligos meet the required specifications and are free of impurities that may interfere with the intended function.

Ensuring experimental reproducibility

Enhancing transfection and hybridization efficiency

Eliminating sequence-dependent artifacts

Reducing off-target effects in RNAi or CRISPR applications

Supporting regulatory submissions with validated characterization data

For therapeutic oligonucleotides, impurities—even at sub-percent levels—can result in immunogenicity or off-target activity. Our robust analytical and purification pipelines mitigate these risks at the preclinical stage, enabling clients to avoid costly setbacks in later development.

Guide to Oligo Analysis & Purification Services

At BOC Sciences, we offer a comprehensive and customizable approach to oligo analysis and purification, tailored to your specific needs. Our service is built upon advanced technologies, precise methodologies, and decades of scientific expertise. Below are the detailed oligo analysis and purification methods available through our service.

Oligo Analysis Services

Hexafluoroisopropanol (HFIP) System:

Utilizes hexafluoroisopropanol as a solvent to analyze and stabilize oligonucleotides, particularly for modified or challenging sequences.

High-Resolution Mass Spectrometry (HR-MS):

Accurately determines the molecular weight and sequence variations of oligonucleotides.

Capillary Electrophoresis (CE):

Separates oligos by size and charge, offering single-nucleotide resolution for purity and integrity.

Ultraviolet-Visible Spectroscopy (UV-Vis):

Measures oligo concentration and assesses purity by analyzing absorbance at 260 nm and other wavelengths.

MALDI-TOF Mass Spectrometry:

Uses laser desorption to identify oligos' molecular weight and sequence in a high-throughput manner.

Nuclear Magnetic Resonance (NMR) Spectroscopy:

Provides detailed structural insights of oligonucleotides at the atomic level, including modifications.

Polymerase Chain Reaction (PCR) Amplification-based Verification:

Confirms oligo sequence and functionality through PCR amplification and sequencing.

Oligo Purification Services

Reverse-Phase High Performance Liquid Chromatography (RP-HPLC):

Separates oligos based on hydrophobicity, providing high-purity fractions.

Gel Electrophoresis (PAGE):

Separates oligonucleotides by size, allowing precise isolation of high-purity products.

Reverse-Phase Ion-Pair Chromatography (RP-IPC):

A variation of RP-HPLC that utilizes ion-pairing agents in the mobile phase, enhancing the separation of modified oligos with hydrophobic or charged modifications.

Anion-Exchange Chromatography (AEX):

Purifies oligos based on their negative charge, removing smaller fragments and contaminants.

Size Exclusion Chromatography (SEC):

Separates oligos based on size, removing aggregates and non-specific oligo forms.

Ion-Pair Chromatography (IPC):

Uses ion-pairing agents for separating oligos with hydrophobic modifications.

Desalting:

Removes salts and small molecular contaminants from oligos, suitable for downstream enzymatic applications.

Polymer-Based Solid-Phase Extraction (SPE):

Uses solid-phase support for quick and efficient purification of oligos with specific modifications.

Gel Filtration Chromatography (Size Exclusion Chromatography):

Separates oligos based on size by passing them through a column filled with porous beads, ideal for eliminating aggregation or unwanted oligomeric species.

Affinity Chromatography:

Uses specific binding interactions (e.g., biotin-streptavidin) for highly selective purification of modified oligos, such as those conjugated with tags or functional groups.

Magnetic Bead-Based Purification:

Leverages magnetic beads coated with specific ligands to selectively purify oligos with custom modifications, offering high precision and minimal sample loss.

Cation-Exchange Chromatography:

Purifies oligos by separating them based on their charge, ideal for oligos with positively charged modifications or nucleotides.

Additional Oligo Analysis & Purification Services

Oligonucleotide Characterization Services

This service involves comprehensive analysis of oligonucleotide properties such as sequence verification, base composition, and structural integrity. It ensures the oligos meet the required specifications for various research and therapeutic applications.

Oligonucleotide Stability Testing Services

We assess the chemical and physical stability of oligonucleotides under various storage conditions, simulating real-world environments. This service is crucial for determining the shelf-life and optimal storage conditions for oligos.

Oligonucleotide Drug Release Testing Services

This service evaluates the release profile of oligonucleotide-based therapeutics or delivery systems over time. It helps in understanding the kinetics of drug release, ensuring consistent and controlled delivery of oligonucleotide drugs.

Fragment Analysis

Utilizes techniques such as capillary electrophoresis to analyze oligonucleotide fragments generated during sequencing or PCR amplification. It allows precise identification of sequence variants and ensures high-quality data for downstream applications.

RNA Extraction Service

Our RNA extraction service isolates high-quality RNA from various biological samples, providing clean and intact RNA for downstream applications like RT-PCR, sequencing, and expression analysis. This is essential for accurate gene expression studies and functional genomics.

RNA Pull Down Assay Service

This service enables the identification of RNA-binding proteins or other interacting molecules by capturing target RNA sequences and their associated partners. It is valuable for studying RNA-protein interactions and understanding RNA functionality in cellular processes.

Looking for a thorough Oligo Analysis & Purification Service?

Contact us today—our experts are ready and eager to assist you!

Get A Quote

Step-by-Step Workflow of Oligo Analysis & Purification Service

At BOC Sciences, we provide a streamlined and efficient process for oligonucleotide analysis and purification that ensures the highest level of quality control. Each step of the service is meticulously designed to meet your specific requirements and deliver optimal results.

1Client Consultation and Initial Assessment

  • We begin by discussing your project requirements, understanding the specific goals for your oligonucleotide, and gathering necessary details, such as sequence, modifications, intended application, and required purity level.
  • A detailed assessment helps us recommend the most appropriate analysis and purification methods tailored to your oligo's characteristics.

2Sample Submission and Preparation

  • Once the consultation is complete, you submit your oligonucleotide sample to us in the required format.
  • Our team prepares the sample for initial analysis by verifying the concentration and quality, ensuring it is compatible with the selected analysis methods.

Adjustments to solvent or buffer conditions may be made to optimize sample performance during the analysis and purification process.

3Preliminary Quality Check and Screening

  • The initial sample undergoes preliminary quality control to confirm the integrity and purity of the oligonucleotide.
  • A rapid screening process is conducted using high-precision instruments to detect any obvious impurities or degradation in the sample.
  • This step sets the baseline for further purification or correction steps.

4Customized Oligo Purification Workflow

  • Based on the results of the preliminary screening, our team customizes the purification process to meet your specific requirements. Each oligo is treated according to its molecular weight, structure, and the presence of modifications.
  • We employ tailored purification methods to eliminate unwanted byproducts, truncated sequences, salts, or any other impurities.

5In-Depth Analytical Verification Post-Purification

  • Following purification, the oligonucleotide is re-verified to ensure that it meets the required purity and sequence integrity.
  • Analytical techniques are employed to assess the success of the purification, confirming that the oligo meets the specified criteria for molecular weight, sequence correctness, and overall purity.

6Comprehensive Data Generation and Reporting

  • Once the oligonucleotide has been purified and analyzed, a detailed Certificate of Analysis (CoA) is provided.
  • The report includes data from the various analytical techniques used throughout the process, such as mass spectrometry, spectrophotometry, and any additional quality metrics relevant to the project.
  • This documentation provides full traceability and evidence of compliance with the requested specifications.

7Final Delivery

  • Upon successful verification and analysis, the purified oligonucleotide is delivered to you in the format best suited for your next steps (e.g., lyophilized or in solution).
  • Our packaging is designed to ensure that the integrity of the oligo is preserved during shipment, maintaining its suitability for your research or application.

8Post-Service Support

  • After receiving the purified oligonucleotide, you can contact our team for further support or troubleshooting if needed.
  • We offer guidance on storage conditions, handling protocols, or any additional services related to your oligonucleotide's downstream applications.
  • Each of these steps is conducted with the highest standards of quality and precision, ensuring that your oligonucleotide is ready for immediate use in your research or development program.

Advantages of Our Oligo Analysis & Purification Service

BOC Sciences offers a comprehensive suite of Oligo Analysis & Purification services tailored to meet the rigorous demands of modern biotechnology and preclinical research.

Unmatched Expertise and Experience

With years of expertise in biochemical services, BOC Sciences is a trusted partner for preclinical oligo analysis and purification. Our team consists of highly trained scientists and specialists who leverage cutting-edge techniques and equipment to deliver results with unparalleled accuracy and reliability.

Tailored Solutions for Complex Oligonucleotides

We understand that each oligonucleotide is unique, especially when dealing with modifications such as LNA, 2'-OMe, phosphorothioates, fluorophores, and other conjugates. Our purification and analysis processes are fully customizable to accommodate various chemical modifications, ensuring that even complex oligos are handled with precision.

Advanced Analytical Sensitivity

We utilize advanced instrumentation such as high-resolution mass spectrometry (HRMS), capillary electrophoresis (CE), and liquid chromatography techniques to identify even the smallest impurities or sequence variations. This high level of sensitivity ensures that our clients receive the most accurate and reproducible data possible.

High Purity and Recovery Rates

Through our rigorous purification processes (e.g., RP-HPLC, PAGE, SEC), we consistently achieve high recovery rates and excellent purity levels—often exceeding 95%. This level of purity is crucial for minimizing off-target effects in applications like CRISPR gene editing, siRNA therapeutics, and diagnostic probe development.

Reliable Data and Method Validation

For critical applications such as therapeutic development and regulatory submission, data reliability is paramount. Our services provide validated methods and comprehensive reports, ensuring that the results meet both your research objectives and regulatory standards.

Choosing BOC Sciences for your Oligo Analysis & Purification needs means working with a partner that values precision, reliability, and scientific excellence. We are committed to providing you with the highest-quality oligonucleotides to support your preclinical research and development goals.

Applications of Oligo Analysis & Purification Service

The Oligo Analysis & Purification services offered by BOC Sciences are essential for a wide range of research, development, and preclinical applications. Our services provide the critical support needed for the accurate and efficient use of oligonucleotides across numerous fields, including genetic research, drug development, diagnostic applications, and molecular biology.

Gene Editing and CRISPR Technology

Oligonucleotides are pivotal in gene editing, especially in CRISPR/Cas9-based applications, where precise guide RNA (gRNA) sequences are essential for targeting specific genetic sites. Our Oligo Analysis & Purification service ensures that the gRNA used in CRISPR systems is of the highest purity and integrity, minimizing off-target effects and enhancing the accuracy of gene editing.

  • Key Benefits: Reliable purity and correct sequence identification for high-fidelity CRISPR experiments.

RNA Interference (RNAi) and siRNA Therapeutics

Small interfering RNAs (siRNAs) play a crucial role in RNA interference, a technique that silences specific genes. For effective gene silencing, it is vital that siRNAs are of high quality, free from impurities that could lead to unintended biological effects. Our purification service ensures the delivery of high-purity siRNAs, which is crucial for successful therapeutic applications and experimental silencing.

  • Key Benefits: Enhanced specificity and reduced off-target activity in RNAi applications.

Next-Generation Sequencing (NGS) Applications

In NGS, oligonucleotides such as primers and probes are used to amplify and sequence specific regions of the genome. The accuracy and reliability of NGS results are heavily dependent on the quality of these oligonucleotides. Our Oligo Analysis & Purification service guarantees that primers and probes meet the stringent requirements for sensitivity, specificity, and purity needed in high-throughput sequencing workflows.

  • Key Benefits: Accurate and reproducible sequencing results, reduced primer-dimer formation, and optimized PCR efficiency.

Diagnostic Oligo Probes and Biomarker Detection

Oligonucleotides are commonly used in diagnostic assays for the detection of specific nucleic acid sequences associated with pathogens, genetic disorders, or cancers. To achieve reliable diagnostic results, oligonucleotides must be free of impurities and possess high specificity. Our services ensure that the oligonucleotides used in assays like PCR, LAMP, and microarrays are of the highest quality, increasing the accuracy and sensitivity of detection.

  • Key Benefits: Improved detection sensitivity and accuracy in diagnostic tests.

Synthesis of Long Oligonucleotides and Complex Constructs

In applications such as gene synthesis and the creation of synthetic biology constructs, long oligonucleotides are often required. These constructs can be challenging to synthesize and purify due to their size and complexity. Our purification service helps to ensure that long or complex oligos, whether for synthetic gene construction or vector preparation, meet the purity standards necessary for successful application.

  • Key Benefits: Efficient synthesis and purification of long or complex oligos for gene synthesis and vector construction.

Biopharmaceutical Development and Research

For the development of novel biopharmaceuticals, oligonucleotide-based therapies such as aptamers, ribozymes, and small-molecule oligonucleotides are gaining popularity. These oligos need to be of the highest quality to ensure they interact specifically with their target molecules. Our analysis and purification services play an essential role in ensuring the integrity and functionality of oligos used in preclinical biopharmaceutical development.

  • Key Benefits: Quality control for oligonucleotide-based biopharmaceutical development.

FAQs about Oligo Analysis & Purification Service

FAQs about sgRNA Services

Related Services

Related Products

Related Resources

Online Inquiry
Verification code
Inquiry Basket