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2'-Modified Phosphoramidites
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S-cEt-C phosphoramidite
Description: S-cEt-C phosphoramidite is a specialized reagent used in the chemical synthesis of modified oligonucleotides. This compound features a cytosine (C) base that is methylated at the 5th position (5-Me), with an N4-benzoyl (N-Bz) protecting group and a constrained ethyl (cEt) modification. Additionally, it has a 5'-O-(4,4'-dimethoxytrityl) (ODMT) protective group. The constrained ethyl (cEt) modification enhances the stability and binding affinity of the resulting oligonucleotide, increasing resistance to nuclease degradation and improving hybridization properties. 5'-ODMT cEt N-Bz 5-Me C Phosphoramidite (Amidite) is an essential reagent for synthesizing modified oligonucleotides, offering enhanced stability, binding affinity, and resistance to degradation, which is particularly useful in advanced nucleic acid-based therapeutics and research.
CAT: BRP-00733
CAS: 1197033-17-2
Molecular Formula: C49H56N5O9P
Molecular Weight: 889.99
Purity: 98%
Appearance: White to off-white solid
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Storage: Store at -20 °C, sealed storage, away from moisture
InChIKey: BDTXILPCBUAYPJ-USFFSJIASA-N
Solubility: Soluble in DMSO
CanonicalSMILES: CC1C2(C(C(O1)C(O2)N3C=C(C(=NC3=O)NC(=O)C4=CC=CC=C4)C)OP(N(C(C)C)C(C)C)OCCC#N)COC(C5=CC=CC=C5)(C6=CC=C(C=C6)OC)C7=CC=C(C=C7)OC
IUPAC Name: N-[1-[(1S,3R,4R,6S,7S)-1-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-7-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxy-6-methyl-2,5-dioxabicyclo[2.2.1]heptan-3-yl]-5-methyl-2-oxopyrimidin-4-yl]benzamide
InChI: InChI=1S/C49H56N5O9P/c1-32(2)54(33(3)4)64(60-29-15-28-50)63-43-42-46(53-30-34(5)44(52-47(53)56)51-45(55)36-16-11-9-12-17-36)62-48(43,35(6)61-42)31-59-49(37-18-13-10-14-19-37,38-20-24-40(57-7)25-21-38)39-22-26-41(58-8)27-23-39/h9-14,16-27,30,32-33,35,42-43,46H,15,29,31H2,1-8H3,(H,51,52,55,56)/t35-,42+,43-,46+,48-,64?/m0/s1
Synonyms: 5'-ODMT cEt N-Bzm5 C Phosphoramidite (Amidite); N-[1-[2,5-Anhydro-4-C-[[bis(4-methoxyphenyl)phenylmethoxy]methyl]-3-O-[[bis(1-methylethyl)amino](2-cyanoethoxy)phosphino]-6-deoxy-α-L-mannofuranosyl]-1,2-dihydro-5-methyl-2-oxo-4-pyrimidinyl]benzamide; (1S,3R,4R,6S,7S)-3-(4-benzamido-5-methyl-2-oxopyrimidin-1(2H)-yl)-1-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-6-methyl-2,5-dioxabicyclo[2.2.1]heptan-7-yl 2-cyanoethyl diisopropylphosphoramidite; 5'-ODMT cEt N-Bz 5-Me C Phosphoramidite; 5'-O-DMTr-cEt-BNA-N-Bz-Me-Cytidine-CEP; CET-5-Me-C(Bz) Phosphoramidite
DMT-PEG Phosphoramidite 14
Description: DMT-PEG Phosphoramidite 14 is a phosphoramidite derivative containing a polyethylene glycol (PEG) linker with a dimethoxytrityl (DMT) protecting group. This compound is utilized in oligonucleotide synthesis for introducing PEG linkers between nucleotide units.
CAT: BRP-00734
CAS: 165682-44-0
Molecular Formula: C40H57N2O9P
Molecular Weight: 740.87
Purity: >98%
Appearance: Colorless to light yellow oily matter
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Storage: Store at -20 °C
InChIKey: DORDTNWVJPQKOO-UHFFFAOYSA-N
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OCCOCCOCCOCCOCCOC(C1=CC=CC=C1)(C2=CC=C(C=C2)OC)C3=CC=C(C=C3)OC
IUPAC Name: 3-[2-[2-[2-[2-[2-[bis(4-methoxyphenyl)-phenylmethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile
InChI: InChI=1S/C40H57N2O9P/c1-33(2)42(34(3)4)52(50-22-10-21-41)51-32-30-48-28-26-46-24-23-45-25-27-47-29-31-49-40(35-11-8-7-9-12-35,36-13-17-38(43-5)18-14-36)37-15-19-39(44-6)20-16-37/h7-9,11-20,33-34H,10,22-32H2,1-6H3
Synonyms: 1,1-bis(4-methoxyphenyl)-1-phenyl-2,5,8,11,14-pentaoxahexadecan-16-yl (2-cyanoethyl) diisopropylphosphoramidite; Phosphoramidous acid, bis(1-methylethyl)-, 16,16-bis(4-methoxyphenyl)-16-phenyl-3,6,9,12,15-pentaoxahexadec-1-yl 2-cyanoethyl ester; DMTr PEG5 amidite; 15-O-Dimethoxytritylpentethyleneglycol, 1-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite; DMT-PEG Phosphoramidite
Trt-C6-Amine-Linker Phosphoramidite
Description: Trt-C6-Amine-Linker Phosphoramidite is a phosphoramidite reagent used in solid-phase synthesis for peptide modification. It contains a trityl (Trt)-protected amine group attached to a C6 linker, facilitating the conjugation of peptides to solid supports.
CAT: BRP-00735
CAS: 2940950-24-1
Molecular Formula: C34H46N3O2P
Molecular Weight: 559.73
Purity: >98%
Appearance: Colorless to light yellow oily matter
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Storage: Store at -20 °C
InChIKey: WUQULGCFIVOGPN-UHFFFAOYSA-N
CanonicalSMILES: N#CCCOP(OCCCCCCNC(C=1C=CC=CC1)(C=2C=CC=CC2)C=3C=CC=CC3)N(C(C)C)C(C)C
IUPAC Name: 2-cyanoethyl (6-(tritylamino)hexyl) diisopropylphosphoramidite
InChI: InChI=1S/C34H46N3O2P/c1-29(2)37(30(3)4)40(39-28-18-25-35)38-27-17-6-5-16-26-36-34(31-19-10-7-11-20-31,32-21-12-8-13-22-32)33-23-14-9-15-24-33/h7-15,19-24,29-30,36H,5-6,16-18,26-28H2,1-4H3
Synonyms: Tr-C6-amine-linker amidite; Trityl-C6-amino-linker Phosphoramidite
cytidine-3'-ce-phosphoramidite.gif)
5'-O-DMT-N4-Acetyl-5-Methy-2'-O-(2-methoxyethyl)cytidine 3'-CE phosphoramidite
Description: 5'-O-DMT-N4-Acetyl-5-Methyl-2'-O-(2-methoxyethyl)cytidine 3'-CE phosphoramidite is a modified nucleotide phosphoramidite used in oligonucleotide synthesis. It contains a cytidine nucleotide with a dimethoxytrityl (DMT) protecting group on the 5'-hydroxyl group, an acetyl (Ac) group on the N4 position of the cytosine base, and a methyl group on the 5-position of the cytosine base. Additionally, a 2-methoxyethyl group is attached to the 2'-hydroxyl group of cytidine. This phosphoramidite is employed in the synthesis of modified oligonucleotides for various research and diagnostic applications.
CAT: BRP-00736
Molecular Formula: C45H58N5O10P
Molecular Weight: 859.96
Purity: >98%
Appearance: White to off-white powder
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Storage: Store at -20 °C
InChIKey: RLGAWJOBUUSYCH-ACYYXZCMSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: CC1=CN(C(=O)N=C1NC(=O)C)C2C(C(C(O2)COC(C3=CC=CC=C3)(C4=CC=C(C=C4)OC)C5=CC=C(C=C5)OC)OP(N(C(C)C)C(C)C)OCCC#N)OCCOC
IUPAC Name: N-[1-[(2R,3R,4R,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxy-3-(2-methoxyethoxy)oxolan-2-yl]-5-methyl-2-oxopyrimidin-4-yl]acetamide
InChI: InChI=1S/C45H58N5O10P/c1-30(2)50(31(3)4)61(58-25-13-24-46)60-40-39(59-43(41(40)56-27-26-53-7)49-28-32(5)42(47-33(6)51)48-44(49)52)29-57-45(34-14-11-10-12-15-34,35-16-20-37(54-8)21-17-35)36-18-22-38(55-9)23-19-36/h10-12,14-23,28,30-31,39-41,43H,13,25-27,29H2,1-9H3,(H,47,48,51,52)/t39-,40-,41-,43-,61?/m1/s1
Synonyms: 5-Me-DMT-2'-O-MOE-C(Ac)-CE-Phosphoramidite; Cytidine, N-acetyl-5'-O-[bis(4-methoxyphenyl)phenylmethyl]-2'-O-(2-methoxyethyl)-5-methyl-, 3'-[2-cyanoethyl N,N-bis(1-methylethyl)phosphoramidite]; N4-acetyl-2'-O-methoxyethyl-5-O-dimethoxytrityl-5-methylcytidine-3'-phosphoramidite; N4-acetyl-2'-O-methoxyethyl-5'-O-dimethoxytrityl-5-methylcytidine-3'-amidite; 2'-MOE MeC(Ac) amidite; (2R,3R,4R,5R)-5-(4-acetamido-5-methyl-2-oxopyrimidin-1(2H)-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-(2-methoxyethoxy)tetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite; N4-Acetyl-5-methyl-5'-O-(4,4'-dimethoxytrityl)-2'-O-methoxyethyl-cytidine-3'-cyanoethyl phosphoramidite
DMT-PEG Phosphoramidite 20
Description: DMT-PEG Phosphoramidite 20 is a phosphoramidite compound utilized in oligonucleotide synthesis. It contains a DMT (dimethoxytrityl) protective group and a polyethylene glycol (PEG) linker, allowing for the introduction of PEG moieties into oligonucleotide sequences, which can confer various properties such as enhanced solubility or altered binding affinity.
CAT: BRP-00737
CAS: 165682-45-1
Molecular Formula: C44H65N2O11P
Molecular Weight: 828.98
Purity: >98%
Appearance: Colorless to light yellow oily matter
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Storage: Store at -20 °C
InChIKey: ZEMYDSDLDZPUBS-UHFFFAOYSA-N
CanonicalSMILES: N#CCCOP(OCCOCCOCCOCCOCCOCCOCCOC(C=1C=CC=CC1)(C2=CC=C(OC)C=C2)C3=CC=C(OC)C=C3)N(C(C)C)C(C)C
IUPAC Name: 1,1-bis(4-methoxyphenyl)-1-phenyl-2,5,8,11,14,17,20-heptaoxadocosan-22-yl (2-cyanoethyl) diisopropylphosphoramidite
InChI: InChI=1S/C44H65N2O11P/c1-37(2)46(38(3)4)58(56-22-10-21-45)57-36-34-54-32-30-52-28-26-50-24-23-49-25-27-51-29-31-53-33-35-55-44(39-11-8-7-9-12-39,40-13-17-42(47-5)18-14-40)41-15-19-43(48-6)20-16-41/h7-9,11-20,37-38H,10,22-36H2,1-6H3
Synonyms: Phosphoramidous acid, bis(1-methylethyl)-, 22,22-bis(4-methoxyphenyl)-22-phenyl-3,6,9,12,15,18,21-heptaoxadocos-1-yl 2-cyanoethyl ester; DMTr PEG7 amidite; Spacer Phosphoramidite 20; 20-O-Dimethoxytritylheptaethyleneglycol, 1-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite
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PMO C (Ac)
Description: PMO C (Ac) is a novel biomedical compound. With its unique molecular structure, it exhibits potential as a targeted therapeutic agent for treating various diseases.
CAT: BRP-00738
Molecular Formula: C32H35ClN5O5P
Molecular Weight: 636.09
Purity: >98%
Appearance: White to off-white powder
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InChIKey: STADUQUAHZZNDG-REKZWXCCSA-N
CanonicalSMILES: CC(=O)NC1=NC(=O)N(C=C1)C2CN(CC(O2)COP(=O)(N(C)C)Cl)C(C3=CC=CC=C3)(C4=CC=CC=C4)C5=CC=CC=C5
IUPAC Name: N-[1-[(2R,6S)-6-[[chloro(dimethylamino)phosphoryl]oxymethyl]-4-tritylmorpholin-2-yl]-2-oxopyrimidin-4-yl]acetamide
InChI: InChI=1S/C32H35ClN5O5P/c1-24(39)34-29-19-20-38(31(40)35-29)30-22-37(21-28(43-30)23-42-44(33,41)36(2)3)32(25-13-7-4-8-14-25,26-15-9-5-10-16-26)27-17-11-6-12-18-27/h4-20,28,30H,21-23H2,1-3H3,(H,34,35,39,40)/t28-,30+,44?/m0/s1
Synonyms: ((2S,6R)-6-(4-acetamido-2-oxopyrimidin-1(2H)-yl)-4-tritylmorpholin-2-yl)methyl dimethylphosphoramidochloridate; [(2S,6R)-6-[4-(Acetylamino)-2-oxo-1(2H)-pyrimidinyl]-4-(triphenylmethyl)-2-morpholinyl]methyl N,N-dimethylphosphoramidochloridate
Related CAS: 2077093-68-4 (S-isomer) ; 2077093-70-8 (R-isomer)
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PMO A (Ac)
Description: PMO A (Ac) is a novel biomedical compound. With its unique molecular structure, it exhibits potential as a targeted therapeutic agent for treating various diseases.
CAT: BRP-00739
Molecular Formula: C33H35ClN7O4P
Molecular Weight: 660.11
Purity: >98%
Appearance: White to off-white powder
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InChIKey: JHJWWJWGIULSQK-MLNKQRNVSA-N
CanonicalSMILES: CC(=O)NC1=C2C(=NC=N1)N(C=N2)C3CN(CC(O3)COP(=O)(N(C)C)Cl)C(C4=CC=CC=C4)(C5=CC=CC=C5)C6=CC=CC=C6
IUPAC Name: N-[9-[(2R,6S)-6-[[chloro(dimethylamino)phosphoryl]oxymethyl]-4-tritylmorpholin-2-yl]purin-6-yl]acetamide
InChI: InChI=1S/C33H35ClN7O4P/c1-24(42)38-31-30-32(36-22-35-31)41(23-37-30)29-20-40(19-28(45-29)21-44-46(34,43)39(2)3)33(25-13-7-4-8-14-25,26-15-9-5-10-16-26)27-17-11-6-12-18-27/h4-18,22-23,28-29H,19-21H2,1-3H3,(H,35,36,38,42)/t28-,29+,46?/m0/s1
Synonyms: ((2S,6R)-6-(6-acetamido-9H-purin-9-yl)-4-tritylmorpholin-2-yl)methyl dimethylphosphoramidochloridate; [(2S,6R)-6-[6-(acetamido)-9H-purin-9-yl]-4-(triphenylmethyl)-2-morpholinyl]methyl N,N-dimethylphosphoramidochloridate
Reverse Abasic Phosphoramidite
Description: Reverse Abasic Phosphoramidite is a specialized compound used in oligonucleotide synthesis. It allows for the controlled introduction of abasic sites, which are sites lacking a nucleobase, into oligonucleotide sequences. These abasic sites serve as versatile molecular tools for various applications in molecular biology, including studying nucleic acid structure, elucidating enzyme kinetics, and investigating nucleic acid-protein interactions.
CAT: BRP-00740
CAS: 401813-16-9
Molecular Formula: C35H45N2O6P
Molecular Weight: 620.73
Purity: >98%
Appearance: White to faint yellow powder
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Storage: Store at -20 °C
InChIKey: WPNQXLQBMSUHFX-JUWSMZLESA-N
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OCC1C(CCO1)OC(C2=CC=CC=C2)(C3=CC=C(C=C3)OC)C4=CC=C(C=C4)OC
IUPAC Name: 3-[[(2R,3S)-3-[bis(4-methoxyphenyl)-phenylmethoxy]oxolan-2-yl]methoxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile
InChI: InChI=1S/C35H45N2O6P/c1-26(2)37(27(3)4)44(41-23-10-22-36)42-25-34-33(21-24-40-34)43-35(28-11-8-7-9-12-28,29-13-17-31(38-5)18-14-29)30-15-19-32(39-6)20-16-30/h7-9,11-20,26-27,33-34H,10,21,23-25H2,1-6H3/t33-,34+,44?/m0/s1
Synonyms: D-erythro-Pentitol, 1,4-anhydro-3-O-[bis(4-methoxyphenyl)phenylmethyl]-2-deoxy-, 2-cyanoethyl bis(1-methylethyl)phosphoramidite; 3'-O-(4,4'-dimethoxytrityl)-1',2'-Dideoxy D-ribose-5'-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite; ((2R,3S)-3-(bis(4-methoxyphenyl)(phenyl)methoxy)tetrahydrofuran-2-yl)methyl (2-cyanoethyl) diisopropylphosphoramidite
N4-Ac-7'-OH-N-trityl Morpholino cytosine
Description: N4-Ac-7'-OH-N-trityl Morpholino cytosine may have various applications in medicinal chemistry, particularly in the development of pharmaceuticals or as a building block in organic synthesis. Its specific structure suggests potential biological activity or affinity for certain receptors or enzymes, making it of interest in drug discovery or chemical biology research.
CAT: BRP-00741
Molecular Formula: C30H30N4O4
Molecular Weight: 510.59
Purity: >98%
Appearance: White to yellow powder
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Density: 1.25±0.1 g/cm3
InChIKey: LUTKQLULCNFMMH-XTEPFMGCSA-N
CanonicalSMILES: CC(=O)NC1=NC(=O)N(C=C1)C2CN(CC(O2)CO)C(C3=CC=CC=C3)(C4=CC=CC=C4)C5=CC=CC=C5
IUPAC Name: N-[1-[(2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl]-2-oxopyrimidin-4-yl]acetamide
InChI: InChI=1S/C30H30N4O4/c1-22(36)31-27-17-18-34(29(37)32-27)28-20-33(19-26(21-35)38-28)30(23-11-5-2-6-12-23,24-13-7-3-8-14-24)25-15-9-4-10-16-25/h2-18,26,28,35H,19-21H2,1H3,(H,31,32,36,37)/t26-,28+/m0/s1
Synonyms: N-[1,2-Dihydro-1-[(2R,6S)-6-(hydroxymethyl)-4-(triphenylmethyl)-2-morpholinyl]-2-oxo-4-pyrimidinyl]acetamide; N-(1-((2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl)acetamide
6-Ac-7'-OH-N-trityl morpholino adenosine
Description: 6-Ac-7'-OH-N-trityl morpholino adenosine may have applications in medicinal chemistry, particularly in the development of pharmaceuticals targeting purine receptors or enzymes involved in purine metabolism. Its specific structure suggests potential biological activity, making it of interest in drug discovery or chemical biology research.
CAT: BRP-00742
Molecular Formula: C31H30N6O3
Molecular Weight: 534.62
Purity: >98%
Appearance: White to yellow powder
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InChIKey: URLFNHWSISCXNB-RRPNLBNLSA-N
CanonicalSMILES: CC(=O)NC1=C2C(=NC=N1)N(C=N2)C3CN(CC(O3)CO)C(C4=CC=CC=C4)(C5=CC=CC=C5)C6=CC=CC=C6
IUPAC Name: N-[9-[(2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl]purin-6-yl]acetamide
InChI: InChI=1S/C31H30N6O3/c1-22(39)35-29-28-30(33-20-32-29)37(21-34-28)27-18-36(17-26(19-38)40-27)31(23-11-5-2-6-12-23,24-13-7-3-8-14-24)25-15-9-4-10-16-25/h2-16,20-21,26-27,38H,17-19H2,1H3,(H,32,33,35,39)/t26-,27+/m0/s1
Synonyms: N-(9-((2R,6S)-6-(hydroxymethyl)-4-tritylmorpholin-2-yl)-9H-purin-6-yl)acetamide; N-[9-[(2R,6S)-6-(Hydroxymethyl)-4-(triphenylmethyl)-2-morpholinyl]-9H-purin-6-yl]acetamide; N6-Ac-7'-OH-N-trityl morpholino adenosine
GalNAc-L96 Phosphoramidite
Description: GalNAc-L96 Phosphoramidite is a specialized chemical compound used in oligonucleotide synthesis, particularly in the synthesis of RNA molecules with specific modifications. It contains a GalNAc (N-acetylgalactosamine) group attached to the 5' position of a nucleoside via a linker, allowing for the site-specific incorporation of GalNAc into RNA sequences. This modification mimics natural post-transcriptional modifications found in RNA molecules, such as glycosylation, and can alter the properties and functions of RNA. GalNAc-L96 Phosphoramidite is valuable in research areas such as RNA therapeutics and functional genomics, where modified RNA molecules are used for targeted gene regulation or diagnostic purposes.
CAT: BRP-00743
Molecular Formula: C126H192N13O43P
Molecular Weight: 2607.94
Purity: 98%
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Storage: Store at -20 °C
InChIKey: GJNRYTJOWJMTKY-LXXTXPAYSA-N
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OC1CC(N(C1)C(=O)CCCCCCCCCCC(=O)NC(COCCC(=O)NCCCNC(=O)CCCCOC2C(C(C(C(O2)COC(=O)C)OC(=O)C)OC(=O)C)NC(=O)C)(COCCC(=O)NCCCNC(=O)CCCCOC3C(C(C(C(O3)COC(=O)C)OC(=O)C)OC(=O)C)NC(=O)C)COCCC(=O)NCCCNC(=O)CCCCOC4C(C(C(C(O4)COC(=O)C)OC(=O)C)OC(=O)C)NC(=O)C)COC(C5=CC=CC=C5)(C6=CC=C(C=C6)OC)C7=CC=C(C=C7)OC
IUPAC Name: [(2R,3R,4R,5R,6R)-5-acetamido-6-[5-[3-[3-[3-[3-[3-[5-[(2R,3R,4R,5R,6R)-3-acetamido-4,5-diacetyloxy-6-(acetyloxymethyl)oxan-2-yl]oxypentanoylamino]propylamino]-3-oxopropoxy]-2-[[3-[3-[5-[(2R,3R,4R,5R,6R)-3-acetamido-4,5-diacetyloxy-6-(acetyloxymethyl)oxan-2-yl]oxypentanoylamino]propylamino]-3-oxopropoxy]methyl]-2-[[12-[(2S,4R)-2-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxypyrrolidin-1-yl]-12-oxododecanoyl]amino]propoxy]propanoylamino]propylamino]-5-oxopentoxy]-3,4-diacetyloxyoxan-2-yl]methyl acetate
InChI: InChI=1S/C126H192N13O43P/c1-81(2)139(82(3)4)183(172-68-36-58-127)182-101-72-98(74-171-126(95-40-26-25-27-41-95,96-47-51-99(160-17)52-48-96)97-49-53-100(161-18)54-50-97)138(73-101)112(159)46-29-24-22-20-19-21-23-28-45-111(158)137-125(78-162-69-55-108(155)131-62-37-59-128-105(152)42-30-33-65-165-122-113(134-83(5)140)119(176-92(14)149)116(173-89(11)146)102(179-122)75-168-86(8)143,79-163-70-56-109(156)132-63-38-60-129-106(153)43-31-34-66-166-123-114(135-84(6)141)120(177-93(15)150)117(174-90(12)147)103(180-123)76-169-87(9)144)80-164-71-57-110(157)133-64-39-61-130-107(154)44-32-35-67-167-124-115(136-85(7)142)121(178-94(16)151)118(175-91(13)148)104(181-124)77-170-88(10)145/h25-27,40-41,47-54,81-82,98,101-104,113-124H,19-24,28-39,42-46,55-57,59-80H2,1-18H3,(H,128,152)(H,129,153)(H,130,154)(H,131,155)(H,132,156)(H,133,157)(H,134,140)(H,135,141)(H,136,142)(H,137,158)/t98-,101+,102+,103+,104+,113+,114+,115+,116-,117-,118-,119+,120+,121+,122+,123+,124+,183?/m0/s1
Synonyms: GalNAc Phosphoramidite; GalNac-L96
Unylinker
Description: Unylinker is a versatile linker molecule used in oligonucleotide synthesis and conjugation chemistry. It provides a stable yet cleavable bond between biomolecules or solid supports, allowing for controlled release or attachment.
CAT: BRP-00754
CAS: 852684-08-3
Molecular Formula: C39H35NO10 (free acid)
Molecular Weight: 677.71 (free acid)
Purity: >98%
Appearance: White to yellow powder
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Density: 1.41±0.1 g/cm3
Boiling Point: 871.5±65.0 °C at 760 mmHg
InChIKey: KPROLRFVRRGFBD-VXPJIIKRNA-N
CanonicalSMILES: O=C(O)CCC(=O)OC1C(OC(C=2C=CC=CC2)(C3=CC=C(OC)C=C3)C4=CC=C(OC)C=C4)C5OC1C6C(=O)N(C(=O)C56)C=7C=CC=CC7
IUPAC Name: rel-4-(((3aR,4R,5R,6S,7S,7aS)-6-(bis(4-methoxyphenyl)(phenyl)methoxy)-1,3-dioxo-2-phenyloctahydro-1H-4,7-epoxyisoindol-5-yl)oxy)-4-oxobutanoic acid
InChI: InChI=1/C39H35NO10/c1-46-27-17-13-24(14-18-27)39(23-9-5-3-6-10-23,25-15-19-28(47-2)20-16-25)50-36-34-32-31(33(49-34)35(36)48-30(43)22-21-29(41)42)37(44)40(38(32)45)26-11-7-4-8-12-26/h3-20,31-36H,21-22H2,1-2H3,(H,41,42)/t31-,32+,33-,34+,35-,36+/s2
Synonyms: Butanedioic acid, 1-[(3aR,4R,5R,6S,7S,7aS)-6-[bis(4-methoxyphenyl)phenylmethoxy]octahydro-1,3-dioxo-2-phenyl-4,7-epoxy-1H-isoindol-5-yl] ester, rel-; Butanedioic acid, mono[(3aR,4R,5R,6S,7S,7aS)-6-[bis(4-methoxyphenyl)phenylmethoxy]octahydro-1,3-dioxo-2-phenyl-4,7-epoxy-1H-isoindol-5-yl] ester, rel-; rel-1-[(3aR,4R,5R,6S,7S,7aS)-6-[Bis(4-methoxyphenyl)phenylmethoxy]octahydro-1,3-dioxo-2-phenyl-4,7-epoxy-1H-isoindol-5-yl] butanedioate; UnyLinker
Related CAS: 852684-09-4 (TEA salt)
Unylinker TEA salt
Description: Unylinker is a versatile linker molecule used in oligonucleotide synthesis and conjugation chemistry. It provides a stable yet cleavable bond between biomolecules or solid supports, allowing for controlled release or attachment. In its TEA (triethylammonium) salt form, it enhances solubility and stability, facilitating its application in various biochemical assays and protocols.
CAT: BRP-00755
CAS: 852684-09-4
Molecular Formula: C39H35NO10.C6H15N
Molecular Weight: 778.89
Purity: >98%
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InChIKey: UOLREVIUECQZSG-LEPPYWKBNA-N
CanonicalSMILES: O=C(O)CCC(=O)OC1C(OC(C=2C=CC=CC2)(C3=CC=C(OC)C=C3)C4=CC=C(OC)C=C4)C5OC1C6C(=O)N(C(=O)C56)C=7C=CC=CC7.N(CC)(CC)CC
IUPAC Name: rel-4-(((3aR,4R,5R,6S,7S,7aS)-6-(bis(4-methoxyphenyl)(phenyl)methoxy)-1,3-dioxo-2-phenyloctahydro-1H-4,7-epoxyisoindol-5-yl)oxy)-4-oxobutanoic acid;N,N-diethylethanamine
InChI: InChI=1/C39H35NO10.C6H15N/c1-46-27-17-13-24(14-18-27)39(23-9-5-3-6-10-23,25-15-19-28(47-2)20-16-25)50-36-34-32-31(33(49-34)35(36)48-30(43)22-21-29(41)42)37(44)40(38(32)45)26-11-7-4-8-12-26;1-4-7(5-2)6-3/h3-20,31-36H,21-22H2,1-2H3,(H,41,42);4-6H2,1-3H3/t31-,32+,33-,34+,35-,36+;/s2
Synonyms: Butanedioic acid, 1-[(3aR,4R,5R,6S,7S,7aS)-6-[bis(4-methoxyphenyl)phenylmethoxy]octahydro-1,3-dioxo-2-phenyl-4,7-epoxy-1H-isoindol-5-yl] ester, rel-, compd. with N,N-diethylethanamine (1:1); Butanedioic acid, mono[(3aR,4R,5R,6S,7S,7aS)-6-[bis(4-methoxyphenyl)phenylmethoxy]octahydro-1,3-dioxo-2-phenyl-4,7-epoxy-1H-isoindol-5-yl] ester, rel-, compd. with N,N-diethylethanamine (1:1); UnyLinker triethylamine salt
Related CAS: 852684-08-3 (free base)
-npe-morpholino-g(ibu)-succinate,-tea-salt.gif)
O(6)-NPE-Morpholino G(iBu) succinate, TEA salt
Description: O(6)-NPE-Morpholino G(iBu) succinate, TEA salt imparts unique properties suitable for applications such as antisense oligonucleotide synthesis and nucleic acid-based therapeutics.
CAT: BRP-00756
Molecular Formula: C45H45N7O9 (free acid)
Molecular Weight: 827.90 (free acid)
Purity: >98%
Appearance: White to yellow powder
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Storage: Store at -20 °C, in tightly closed containers, protected from humidity
IUPAC Name: 4-(((2S,6R)-6-(2-isobutyramido-6-(4-nitrophenethoxy)-9H-purin-9-yl)-4-tritylmorpholin-2-yl)methoxy)-4-oxobutanoic acid;N,N-diethylethanamine
Synonyms: 4-((6-(2-isobutyramido-6-(4-nitrophenethoxy)-9H-purin-9-yl)-4-tritylmorpholin-2-yl)methoxy)-4-oxobutanoic acid, triethylamine salt
-succinate,-tea-salt.gif)
Morpholino C(Bz) succinate, TEA salt
Description: Morpholino C(Bz) succinate, TEA salt confers stability and controlled reactivity during oligonucleotide assembly, making them valuable tools in nucleic acid research and therapeutic development.
CAT: BRP-00757
Molecular Formula: C39H36N4O7 (free acid)
Molecular Weight: 672.74 (free acid)
Purity: >98%
Appearance: White to yellow powder
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Storage: Store at -20 °C, in tightly closed containers, protected from humidity
IUPAC Name: 4-[[(2S,6R)-6-(4-benzamido-2-oxopyrimidin-1-yl)-4-tritylmorpholin-2-yl]methoxy]-4-oxobutanoic acid;N,N-diethylethanamine
Synonyms: Butanedioic acid, 1-[[(2S,6R)-6-[4-(benzoylamino)-2-oxo-1(2H)-pyrimidinyl]-4-(triphenylmethyl)-2-morpholinyl]methyl] ester triethylamine salt; 4-[[(2S,6R)-6-(4-Benzamide-2-oxopyrimidine-1(2H)-yl)-4-tritylmorpholine-2-yl]methoxy]-4-oxobutyric acid triethylamine salt; 4-[[(2S,6R)-6-(4-Benzamido-2-oxopyrimidin-1-yl)-4-tritylmorpholin-2-yl]methoxy]-4-oxobutanoic acid triethylamine salt; 1-[[(2S,6R)-6-[4-(Benzoylamino)-2-oxo-1(2H)-pyrimidinyl]-4-(triphenylmethyl)-2-morpholinyl]methyl] butanedioate triethylamine salt
Related CAS: 1362664-31-0 (free base)
-succinate,-tea-salt.gif)
Morpholino A(Bz) succinate, TEA salt
Description: Morpholino A(Bz) succinate, TEA salt confers stability and controlled reactivity during oligonucleotide assembly, making them valuable tools in nucleic acid research and therapeutic development.
CAT: BRP-00758
Molecular Formula: C40H36N6O6 (free acid)
Molecular Weight: 696.76 (free acid)
Purity: >98%
Appearance: White to yellow powder
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Storage: Store at -20 °C, in tightly closed containers, protected from humidity
IUPAC Name: 4-[[(2S,6R)-6-(6-benzamidopurin-9-yl)-4-tritylmorpholin-2-yl]methoxy]-4-oxobutanoic acid;N,N-diethylethanamine
Synonyms: 4-(((2S,6R)-6-(6-benzamido-9H-purin-9-yl)-4-tritylmorpholin-2-yl)methoxy)-4-oxobutanoic acid triethylamine salt; 1-[[(2S,6R)-6-[6-(Benzoylamino)-9H-purin-9-yl]-4-(triphenylmethyl)-2-morpholinyl]methyl] butanedioate triethylamine salt; Butanedioic acid, 1-[[(2S,6R)-6-[6-(benzoylamino)-9H-purin-9-yl]-4-(triphenylmethyl)-2-morpholinyl]methyl] ester triethylamine salt; 4-((6-(6-benzamido-9H-purin-9-yl)-4-tritylmorpholin-2-yl)methoxy)-4-oxobutanoic acid, triethylamine salt
Related CAS: 1446206-67-2 (free base)
N-Trityl-N4-benzoyl-morpholino-C-7'-O-phosphoramidite
Description: Morpholino nucleoside phosphoramidite monomer to make special oligonucleotides or modified RNA derivatives
CAT: BRP-00762
CAS: 2434794-97-3
Molecular Formula: C44H49N6O5P
Molecular Weight: 772.87
Purity: ≥97% by HPLC
Appearance: White to off-white foam solid
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Storage: Store at -20 °C, under inert atmosphere
InChIKey: BUAVHKSBQVLXPP-SKSUEDBOSA-N
Solubility: Soluble in Acetone, Chloroform, DMSO, Ethanol, Methanol
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OCC1CN(CC(O1)N2C=CC(=NC2=O)NC(=O)C3=CC=CC=C3)C(C4=CC=CC=C4)(C5=CC=CC=C5)C6=CC=CC=C6
IUPAC Name: N-[1-[(2R,6S)-6-[[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxymethyl]-4-tritylmorpholin-2-yl]-2-oxopyrimidin-4-yl]benzamide
InChI: InChI=1S/C44H49N6O5P/c1-33(2)50(34(3)4)56(53-29-17-27-45)54-32-39-30-48(31-41(55-39)49-28-26-40(47-43(49)52)46-42(51)35-18-9-5-10-19-35)44(36-20-11-6-12-21-36,37-22-13-7-14-23-37)38-24-15-8-16-25-38/h5-16,18-26,28,33-34,39,41H,17,29-32H2,1-4H3,(H,46,47,51,52)/t39-,41+,56?/m0/s1
Synonyms: N-Trityl-N4-benzoyl-morpholino-C-5'-O-phosphoramidite; ((2S,6R)-6-(4-benzamido-2-oxopyrimidin-1(2H)-yl)-4-tritylmorpholin-2-yl)methyl (2-cyanoethyl) diisopropylphosphoramidite
5'-O-DMTr-2'-O-methyl-N6-methyl adenosine 3'-CED phosphoramidite
Description: Phosphoramidite monomer to make special oligonucleotides or modified RNA derivatives.
CAT: BRP-00763
CAS: 2348385-04-4
Molecular Formula: C42H52N7O7P
Molecular Weight: 797.88
Purity: ≥97% by HPLC
Appearance: White to off-white foam solid
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Storage: Store at -20 °C, under inert atmosphere
InChIKey: XXRTXDUOPCNYDH-DJADKNTFSA-N
Solubility: Soluble in Acetone, Chloroform, DMSO, Ethanol, Methanol
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OC1C(OC(C1OC)N2C=NC3=C(N=CN=C32)NC)COC(C4=CC=CC=C4)(C5=CC=C(C=C5)OC)C6=CC=C(C=C6)OC
IUPAC Name: 3-[[(2R,3R,4R,5R)-2-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-methoxy-5-[6-(methylamino)purin-9-yl]oxolan-3-yl]oxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile
InChI: InChI=1S/C42H52N7O7P/c1-28(2)49(29(3)4)57(54-24-12-23-43)56-37-35(55-41(38(37)52-8)48-27-47-36-39(44-5)45-26-46-40(36)48)25-53-42(30-13-10-9-11-14-30,31-15-19-33(50-6)20-16-31)32-17-21-34(51-7)22-18-32/h9-11,13-22,26-29,35,37-38,41H,12,24-25H2,1-8H3,(H,44,45,46)/t35-,37-,38-,41-,57?/m1/s1
Synonyms: 5'-O-(4,4'-Dimethoxytrityl)-2'-O-methyl-N6-methyladenosine 3'-CED phosphoramidite; 5'-O-DMTr-2'-O-methyl-N6-methyladenosine-3'-phosphoramidite
N-Trityl-N2-isobutyryl-morpholino-G-7'-O-phosphoramidite
Description: Morpholino nucleoside phosphoramidite monomer to make special oligonucleotides or modified RNA derivatives.
CAT: BRP-00764
CAS: 2434795-03-4
Molecular Formula: C42H51N8O5P
Molecular Weight: 778.88
Purity: ≥97% by HPLC
Appearance: White to off-white foam solid
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Storage: Store at -20 °C, under inert atmosphere
InChIKey: FRWLFVXCJRIGKK-AUOFHDIISA-N
Solubility: Soluble in Acetone, Chloroform, DMSO, Ethanol, Methanol
CanonicalSMILES: CC(C)C(=O)NC1=NC2=C(C(=O)N1)N=CN2C3CN(CC(O3)COP(N(C(C)C)C(C)C)OCCC#N)C(C4=CC=CC=C4)(C5=CC=CC=C5)C6=CC=CC=C6
IUPAC Name: N-[9-[(2R,6S)-6-[[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxymethyl]-4-tritylmorpholin-2-yl]-6-oxo-1H-purin-2-yl]-2-methylpropanamide
InChI: InChI=1S/C42H51N8O5P/c1-29(2)39(51)46-41-45-38-37(40(52)47-41)44-28-49(38)36-26-48(25-35(55-36)27-54-56(53-24-16-23-43)50(30(3)4)31(5)6)42(32-17-10-7-11-18-32,33-19-12-8-13-20-33)34-21-14-9-15-22-34/h7-15,17-22,28-31,35-36H,16,24-27H2,1-6H3,(H2,45,46,47,51,52)/t35-,36+,56?/m0/s1
Synonyms: N-Trityl-N2-isobutyryl-morpholino-G-5'-O-phosphoramidite
-2'-o-(2-methoxyethyl)-inosine-3'-ced-phosphoramidite.gif)
5'-O-(4,4'-Dimethoxytrityl)-2'-O-(2-methoxyethyl) inosine 3'-CED phosphoramidite
Description: Phosphoramidite monomer to make special oligonucleotides or modified RNA derivatives.
CAT: BRP-00765
Molecular Formula: C43H53N6O9P
Molecular Weight: 828.89
Purity: ≥97% by HPLC
Appearance: White to off-white foam solid
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Storage: Store at -20 °C, under inert atmosphere
InChIKey: FSSPCCHOIYMGBP-NFQMNAKDSA-N
Solubility: Soluble in Acetone, Chloroform, DMSO, Ethanol, Methanol
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OC1C(OC(C1OCCOC)N2C=NC3=C2N=CNC3=O)COC(C4=CC=CC=C4)(C5=CC=C(C=C5)OC)C6=CC=C(C=C6)OC
IUPAC Name: 3-[[(2R,3R,4R,5R)-2-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-(2-methoxyethoxy)-5-(6-oxo-1H-purin-9-yl)oxolan-3-yl]oxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile
InChI: InChI=1S/C43H53N6O9P/c1-29(2)49(30(3)4)59(56-23-11-22-44)58-38-36(57-42(39(38)54-25-24-51-5)48-28-47-37-40(48)45-27-46-41(37)50)26-55-43(31-12-9-8-10-13-31,32-14-18-34(52-6)19-15-32)33-16-20-35(53-7)21-17-33/h8-10,12-21,27-30,36,38-39,42H,11,23-26H2,1-7H3,(H,45,46,50)/t36-,38-,39-,42-,59?/m1/s1
Synonyms: DMTr-MOE-Inosine-3-CED-phosphoramidite; (2R,3R,4R,5R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-(2-methoxyethoxy)-5-(6-oxo-1,6-dihydro-9H-purin-9-yl)tetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite; 2'-MOE I amidite
