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Phosphoramidites

2'-Modified Phosphoramidites
(529/529)
2'-Phosphoramidites
(27/27)
3'-Modified Phosphoramidites
(201/201)
5'-Modified Phosphoramidites
(30/30)
Arabino Phosphoramidites
(23/23)
Base Protected Phosphoramidites (418/418) Dye Phosphoramidites
(53/53)
Label Phosphoramidites
(80/80)
Linker Phosphoramidites
(85/85)
Other Phosphoramidites
(97/97)
PMO Phosphoramidates and Derivatives (33/33) PseudoUridine Phosphoramidite
(12/12)
Reverse Phosphoramidites
(25/25)
Spacer Phosphoramidites
(24/24)
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2'-OTFM G(iBu) amidite

Description: 2'-OTFM G(iBu) amidite is a modified phosphoramidite used in oligonucleotide synthesis to introduce 2'-O-trifluoromethyl (OTFM) modifications into RNA sequences, specifically targeting guanosine (G). This modification involves adding a trifluoromethyl group to the 2'-position of guanosine and attaching an isobutyl (iBu) group to the exocyclic amine of guanosine. It enhances the stability and specificity of RNA molecules and is commonly used in applications such as RNA interference, antisense therapy, and RNA structural studies.
CAT: BRP-00818
Molecular Formula: C45H53F3N7O9P
Molecular Weight: 923.93
Purity: >95%
Appearance: Off-white solid
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Storage: Store at -20 °C
InChIKey: YINYCQLAYPBOSI-SDLFASLNSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: CC(C)C(=O)NC1=NC2=C(C(=O)N1)N=CN2C3C(C(C(O3)COC(C4=CC=CC=C4)(C5=CC=C(C=C5)OC)C6=CC=C(C=C6)OC)OP(N(C(C)C)C(C)C)OCCC#N)OC(F)(F)F
IUPAC Name: N-[9-[(2R,3R,4R,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxy-3-(trifluoromethoxy)oxolan-2-yl]-6-oxo-1H-purin-2-yl]-2-methylpropanamide
InChI: InChI=1S/C45H53F3N7O9P/c1-27(2)40(56)52-43-51-39-36(41(57)53-43)50-26-54(39)42-38(63-45(46,47)48)37(64-65(61-24-12-23-49)55(28(3)4)29(5)6)35(62-42)25-60-44(30-13-10-9-11-14-30,31-15-19-33(58-7)20-16-31)32-17-21-34(59-8)22-18-32/h9-11,13-22,26-29,35,37-38,42H,12,24-25H2,1-8H3,(H2,51,52,53,56,57)/t35-,37-,38-,42-,65?/m1/s1
Synonyms: (2R,3R,4R,5R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-5-(2-isobutyramido-6-oxo-1,6-dihydro-9H-purin-9-yl)-4-(trifluoromethoxy)tetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite; 2'-OTFM G(iBu) CE-Phosphoramidite

2'-OMe C(Ac) Me-amidite

Description: 2'-OMe C(Ac) Me-amidite is a modified phosphoramidite used in oligonucleotide synthesis, particularly for introducing 2'-O-methyl (2'-OMe) modifications into RNA sequences, specifically targeting cytidine (C). This modification involves adding a methyl group to the 2'-position of cytidine and acetylating the amino group of cytidine. It enhances the stability and specificity of RNA molecules and is commonly used in applications such as RNA interference, antisense therapy, and RNA structural studies.
CAT: BRP-00821
CAS: 205116-62-7
Molecular Formula: C40H51N4O8P
Molecular Weight: 746.84
Purity: >95%
Appearance: Off-white solid
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Storage: Store at -20 °C
InChIKey: QRMLMMQHOYHYLD-GFIGKZKCSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: O=C1N=C(C=CN1C2OC(COC(C=3C=CC=CC3)(C4=CC=C(OC)C=C4)C5=CC=C(OC)C=C5)C(OP(N(C(C)C)C(C)C)C)C2OC)NC(=O)C
IUPAC Name: N-(1-((2R,3R,4R,5R)-5-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-(((diisopropylamino)(methyl)phosphaneyl)oxy)-3-methoxytetrahydrofuran-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl)acetamide
InChI: InChI=1S/C40H51N4O8P/c1-26(2)44(27(3)4)53(9)52-36-34(51-38(37(36)49-8)43-24-23-35(41-28(5)45)42-39(43)46)25-50-40(29-13-11-10-12-14-29,30-15-19-32(47-6)20-16-30)31-17-21-33(48-7)22-18-31/h10-24,26-27,34,36-38H,25H2,1-9H3,(H,41,42,45,46)/t34-,36-,37-,38-,53?/m1/s1
Synonyms: Cytidine, N-acetyl-5'-O-[bis(4-methoxyphenyl)phenylmethyl]-2'-O-methyl-, 3'-[P-methyl-N,N-bis(1-methylethyl)phosphonamidite]; 5'-O-DMTr-2'-OMe-C(Ac)-3'-O-[P-methyl-(N,N-diisopropyl)]-Phosphoramidite; N4-acetyl-5'-O-(4,4'-dimethoxytrityl)-2'-OMe-C-3'-O-[P-methyl-(N,N-diisopropyl)]-Phosphoramidite; 2'-O-Methyl Cytidine (n-acetyl) p-methyl phosphonamidite; 5'-O-DMTr-2'-OMe-C(Ac) methyl phosphonamidite

2'-OMe A(Bz) Me-amidite

Description: 2'-OMe A(Bz) Me-amidite is a modified phosphoramidite used in oligonucleotide synthesis to introduce 2'-O-methyl (2'-OMe) modifications into RNA sequences, specifically targeting adenosine (A). This modification involves adding a methyl group to the 2'-position of adenosine and benzoylating the amino group of adenosine. It enhances the stability and specificity of RNA molecules and is commonly used in applications such as RNA interference, antisense therapy, and RNA structural studies.
CAT: BRP-00822
CAS: 158691-23-7
Molecular Formula: C46H53N6O7P
Molecular Weight: 832.94
Purity: >95%
Appearance: Off-white solid
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InChIKey: GICXOURJNDWAPG-NSWJMSGMSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: O=C(NC1=NC=NC2=C1N=CN2C3OC(COC(C=4C=CC=CC4)(C5=CC=C(OC)C=C5)C6=CC=C(OC)C=C6)C(OP(N(C(C)C)C(C)C)C)C3OC)C=7C=CC=CC7
IUPAC Name: N-(9-((2R,3R,4R,5R)-5-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-(((diisopropylamino)(methyl)phosphaneyl)oxy)-3-methoxytetrahydrofuran-2-yl)-9H-purin-6-yl)benzamide
InChI: InChI=1S/C46H53N6O7P/c1-30(2)52(31(3)4)60(8)59-40-38(58-45(41(40)56-7)51-29-49-39-42(47-28-48-43(39)51)50-44(53)32-15-11-9-12-16-32)27-57-46(33-17-13-10-14-18-33,34-19-23-36(54-5)24-20-34)35-21-25-37(55-6)26-22-35/h9-26,28-31,38,40-41,45H,27H2,1-8H3,(H,47,48,50,53)/t38-,40-,41-,45-,60?/m1/s1
Synonyms: Adenosine, N-benzoyl-5'-O-[bis(4-methoxyphenyl)phenylmethyl]-2'-O-methyl-, 3'-[P-methyl-N,N-bis(1-methylethyl)phosphonamidite]; 5'-O-DMTr-2'-OMe-A(Bz)-3'-O-[P-methyl-(N,N-diisopropyl)]-Phosphoramidite; N6-benzoyl-5'-O-(4,4'-dimethoxytrityl)-2'-OMe-adenosine-3'-O-[P-methyl-(N,N-diisopropyl)]-Phosphoramidite; 2'-O-Methyl Adenosine (n-bz) p-methyl phosphonamidite; 5'-O-DMTr-2'-OMe-A(Bz) methyl phosphonamidite

2'-OMe G(iBu) Me-amidite

Description: 2'-OMe G(iBu) Me-amidite is a modified phosphoramidite used in oligonucleotide synthesis to introduce 2'-O-methyl (2'-OMe) modifications into RNA sequences, specifically targeting guanosine (G). This modification involves adding a methyl group to the 2'-position of guanosine and attaching an isobutyl (iBu) group to the exocyclic amine of guanosine. It enhances the stability and specificity of RNA molecules and is commonly used in applications such as RNA interference, antisense therapy, and RNA structural studies.
CAT: BRP-00823
CAS: 191786-63-7
Molecular Formula: C43H55N6O8P
Molecular Weight: 814.92
Purity: >95%
Appearance: Off-white solid
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InChIKey: JAVHPGCWDJVLLN-BSQJSOGMSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: O=C1N=C(NC(=O)C(C)C)NC2=C1N=CN2C3OC(COC(C=4C=CC=CC4)(C5=CC=C(OC)C=C5)C6=CC=C(OC)C=C6)C(OP(N(C(C)C)C(C)C)C)C3OC
IUPAC Name: N-(9-((2R,3R,4R,5R)-5-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-(((diisopropylamino)(methyl)phosphaneyl)oxy)-3-methoxytetrahydrofuran-2-yl)-6-oxo-6,9-dihydro-1H-purin-2-yl)isobutyramide
InChI: InChI=1S/C43H55N6O8P/c1-26(2)39(50)46-42-45-38-35(40(51)47-42)44-25-48(38)41-37(54-9)36(57-58(10)49(27(3)4)28(5)6)34(56-41)24-55-43(29-14-12-11-13-15-29,30-16-20-32(52-7)21-17-30)31-18-22-33(53-8)23-19-31/h11-23,25-28,34,36-37,41H,24H2,1-10H3,(H2,45,46,47,50,51)/t34-,36-,37-,41-,58?/m1/s1
Synonyms: Guanosine, 5'-O-[bis(4-methoxyphenyl)phenylmethyl]-2'-O-methyl-N-(2-methyl-1-oxopropyl)-, 3'-[P-methyl-N,N-bis(1-methylethyl)phosphonamidite]; 5'-O-DMTr-2'-OMe-G(iBu)-3'-O-[P-methyl-(N,N-diisopropyl)]-Phosphoramidite; N2-Isobutyryl-5'-O-(4,4'-dimethoxytrityl)-2'-OMe-G-3'-O-[P-methyl-(N,N-diisopropyl)]-Phosphoramidite; 2'-O-Methyl Guanosine (n-ibu) p-methyl phosphonamidite; 5'-O-DMTr-2'-OMe-G(iBu) methyl phosphonamidite

MMTr C7 amine amidite

Description: MMTr C7 amine amidite is a linker phosphoramidite used in oligonucleotide synthesis. This compound serves as a linker during solid-phase oligonucleotide synthesis, allowing for the attachment of nucleotide building blocks to a growing oligonucleotide chain. MMTr C7 amine amidite plays a crucial role in the efficient and controlled synthesis of modified oligonucleotides for various applications in molecular biology and biotechnology.
CAT: BRP-00824
Molecular Formula: C36H50N3O3P
Molecular Weight: 603.79
Purity: >95%
Appearance: Light-yellow oily matter
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Storage: Store at -20 °C
InChIKey: SESSADZGYXHMSJ-UHFFFAOYSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: CC(C)N(C(C)C)P(OCCCCCCCNC(C1=CC=CC=C1)(C2=CC=CC=C2)C3=CC=C(C=C3)OC)OCCC#N
IUPAC Name: 3-[[di(propan-2-yl)amino]-[7-[[(4-methoxyphenyl)-diphenylmethyl]amino]heptoxy]phosphanyl]oxypropanenitrile
InChI: InChI=1S/C36H50N3O3P/c1-30(2)39(31(3)4)43(42-29-17-26-37)41-28-16-8-6-7-15-27-38-36(32-18-11-9-12-19-32,33-20-13-10-14-21-33)34-22-24-35(40-5)25-23-34/h9-14,18-25,30-31,38H,6-8,15-17,27-29H2,1-5H3
Synonyms: 2-cyanoethyl (7-(((4-methoxyphenyl)diphenylmethyl)amino)heptyl) diisopropylphosphoramidite; NHMMTr-C7 Phosphoramidite; Monomethoxytrityl-heptylamine-linker Phosphoramidite

MMTr C5 amine amidite

Description: MMTr C5 amine amidite is a linker phosphoramidite used in oligonucleotide synthesis. This compound serves as a linker during solid-phase oligonucleotide synthesis, allowing the attachment of nucleotide building blocks to a growing oligonucleotide chain. MMTr C5 amine amidite plays a crucial role in the efficient and controlled synthesis of modified oligonucleotides for various applications in molecular biology and biotechnology.
CAT: BRP-00825
CAS: 178811-39-7
Molecular Formula: C34H46N3O3P
Molecular Weight: 575.73
Purity: >95%
Appearance: Light-yellow oily matter
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Storage: Store at -20 °C
InChIKey: QKLNHYFSRTYCRA-UHFFFAOYSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OCCCCCNC(C1=CC=C(OC)C=C1)(C2=CC=CC=C2)C3=CC=CC=C3
IUPAC Name: 2-cyanoethyl (5-(((4-methoxyphenyl)diphenylmethyl)amino)pentyl) diisopropylphosphoramidite
InChI: InChI=1S/C34H46N3O3P/c1-28(2)37(29(3)4)41(40-27-15-24-35)39-26-14-8-13-25-36-34(30-16-9-6-10-17-30,31-18-11-7-12-19-31)32-20-22-33(38-5)23-21-32/h6-7,9-12,16-23,28-29,36H,8,13-15,25-27H2,1-5H3
Synonyms: NHMMTr-C5 Phosphoramidite; Monomethoxytrityl-pentylamine-linker Phosphoramidite

MMTr C4 amine amidite

Description: MMTr C4 amine amidite is a linker phosphoramidite used in oligonucleotide synthesis. This compound serves as a linker during solid-phase oligonucleotide synthesis, facilitating the attachment of nucleotide building blocks to a growing oligonucleotide chain. MMTr C4 amine amidite is essential for the controlled synthesis of modified oligonucleotides for various applications in molecular biology and biotechnology.
CAT: BRP-00826
CAS: 178811-38-6
Molecular Formula: C33H44N3O3P
Molecular Weight: 561.71
Purity: >95%
Appearance: Light-yellow oily matter
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Storage: Store at -20 °C
InChIKey: LVYNYJLDPZLYCP-UHFFFAOYSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OCCCCNC(C1=CC=C(OC)C=C1)(C2=CC=CC=C2)C3=CC=CC=C3
IUPAC Name: 2-cyanoethyl (4-(((4-methoxyphenyl)diphenylmethyl)amino)butyl) diisopropylphosphoramidite
InChI: InChI=1S/C33H44N3O3P/c1-27(2)36(28(3)4)40(39-26-14-23-34)38-25-13-12-24-35-33(29-15-8-6-9-16-29,30-17-10-7-11-18-30)31-19-21-32(37-5)22-20-31/h6-11,15-22,27-28,35H,12-14,24-26H2,1-5H3
Synonyms: NHMMTr-C4 Phosphoramidite; Monomethoxytrityl-butylamine-linker Phosphoramidite

MMTr C2 amine amidite

Description: MMTr C2 amine amidite is a linker phosphoramidite used in oligonucleotide synthesis. This compound serves as a linker during solid-phase oligonucleotide synthesis, enabling the attachment of nucleotide building blocks to a growing oligonucleotide chain. MMTr C2 amine amidite is crucial for the controlled synthesis of modified oligonucleotides for various applications in molecular biology and biotechnology.
CAT: BRP-00827
Molecular Formula: C31H40N3O3P
Molecular Weight: 533.65
Purity: >95%
Appearance: Light-yellow oily matter
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Storage: Store at -20 °C
InChIKey: TVYYYWLTEUUCSU-UHFFFAOYSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OCCNC(C1=CC=CC=C1)(C2=CC=CC=C2)C3=CC=C(C=C3)OC
IUPAC Name: 3-[[di(propan-2-yl)amino]-[2-[[(4-methoxyphenyl)-diphenylmethyl]amino]ethoxy]phosphanyl]oxypropanenitrile
InChI: InChI=1S/C31H40N3O3P/c1-25(2)34(26(3)4)38(36-23-12-21-32)37-24-22-33-31(27-13-8-6-9-14-27,28-15-10-7-11-16-28)29-17-19-30(35-5)20-18-29/h6-11,13-20,25-26,33H,12,22-24H2,1-5H3
Synonyms: 2-cyanoethyl (2-(((4-methoxyphenyl)diphenylmethyl)amino)ethyl) diisopropylphosphoramidite; MMTr C2 linker Phosphoramidite; MMT-ethylamine-linker Phosphoramidite; NHMMTr-C2 Phosphoramidite

2'-OTBS U OMe-amidite

Description: 2'-OTBS U OMe-amidite is a reagent used for synthesizing modified oligonucleotides. It has uridine with a 2'-tert-butyldimethylsilyl (TBDMS) protecting group, which enhances stability during the synthesis process. This modification improves the stability and resistance of the oligonucleotides to degradation.
CAT: BRP-00828
CAS: 114207-67-9
Molecular Formula: C43H60N3O9PSi
Molecular Weight: 822.03
Purity: >95%
Appearance: White, off-white to faint yellow powder
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Storage: Store at -20 °C
InChIKey: AJKMTCZXJSDRLN-CYSIDSPMSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: CC(C)N(C(C)C)P(OC)OC1C(OC(C1O[Si](C)(C)C(C)(C)C)N2C=CC(=O)NC2=O)COC(C3=CC=CC=C3)(C4=CC=C(C=C4)OC)C5=CC=C(C=C5)OC
IUPAC Name: 1-[(2R,3R,4R,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-3-[tert-butyl(dimethyl)silyl]oxy-4-[[di(propan-2-yl)amino]-methoxyphosphanyl]oxyoxolan-2-yl]pyrimidine-2,4-dione
InChI: InChI=1S/C43H60N3O9PSi/c1-29(2)46(30(3)4)56(51-10)54-38-36(53-40(45-27-26-37(47)44-41(45)48)39(38)55-57(11,12)42(5,6)7)28-52-43(31-16-14-13-15-17-31,32-18-22-34(49-8)23-19-32)33-20-24-35(50-9)25-21-33/h13-27,29-30,36,38-40H,28H2,1-12H3,(H,44,47,48)/t36-,38-,39-,40-,56?/m1/s1
Synonyms: (2R,3R,4R,5R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-((tert-butyldimethylsilyl)oxy)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-3-yl methyl diisopropylphosphoramidite; 5'-O-DMTr-2'-O-TBDMS-U-3'-Methoxy-phosphoramidite; 5'-O-(4,4'-dimethoxytrityl)-2'-O-(t-butyl-dimethylsilyl)-uridine-3'-Methoxy-phosphoramidite; 2'-tBDSilyl Uridine methyl phosphoramidite

2'-OTBS C(Ac) OMe-amidite

Description: 2'-OTBS C(Ac) OMe-amidite is a modified phosphoramidite used in oligonucleotide synthesis to introduce 2'-OTBS modifications into RNA sequences, specifically targeting cytidine (C). It enhances the stability and specificity of RNA molecules and is commonly used in applications such as RNA interference, antisense therapy, and RNA structural studies.
CAT: BRP-00830
CAS: 1360559-84-7
Molecular Formula: C45H63N4O9PSi
Molecular Weight: 863.08
Purity: >95%
Appearance: White, off-white to faint yellow powder
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Storage: Store at -20 °C
InChIKey: TZHWOKHEMQAVPY-ZMHKPELYSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: O=C1N=C(C=CN1C2OC(COC(C=3C=CC=CC3)(C4=CC=C(OC)C=C4)C5=CC=C(OC)C=C5)C(OP(OC)N(C(C)C)C(C)C)C2O[Si](C)(C)C(C)(C)C)NC(=O)C
IUPAC Name: (2R,3R,4R,5R)-5-(4-acetamido-2-oxopyrimidin-1(2H)-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-((tert-butyldimethylsilyl)oxy)tetrahydrofuran-3-yl methyl diisopropylphosphoramidite
InChI: InChI=1S/C45H63N4O9PSi/c1-30(2)49(31(3)4)59(54-11)57-40-38(56-42(41(40)58-60(12,13)44(6,7)8)48-28-27-39(46-32(5)50)47-43(48)51)29-55-45(33-17-15-14-16-18-33,34-19-23-36(52-9)24-20-34)35-21-25-37(53-10)26-22-35/h14-28,30-31,38,40-42H,29H2,1-13H3,(H,46,47,50,51)/t38-,40-,41-,42-,59?/m1/s1
Synonyms: Cytidine, N-acetyl-5'-O-[bis(4-methoxyphenyl)phenylmethyl]-2'-O-[(1,1-dimethylethyl)dimethylsilyl]-, 3'-[methyl N,N-bis(1-methylethyl)phosphoramidite]; 5'-O-DMTr-2'-O-TBDMS-C(Ac)-3'-Methoxy-phosphoramidite; N4-acetyl-5'-O-(4,4'-dimethoxytrityl)-2'-O-(t-butyl-dimethylsilyl)-cytidine-3'-Methoxy-phosphoramidite

2'-OTBS A(Bz) OMe-amidite

Description: 2'-OTBS A(Bz) OMe-amidite is a reagent for oligonucleotide synthesis. It features adenosine with a tert-butyldimethylsilyl (TBDMS) group at the 2'-position and a benzoyl (bz) group protecting the amino group. This compound is used to incorporate modified adenosine into synthetic oligonucleotides, enhancing their stability and resistance to degradation.
CAT: BRP-00831
CAS: 118684-39-2
Molecular Formula: C51H65N6O8PSi
Molecular Weight: 949.18
Purity: >95%
Appearance: White, off-white to faint yellow powder
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Storage: Store at -20 °C
InChIKey: QECBNEWCSSUUAS-XOMUZYEBSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: O=C(NC1=NC=NC2=C1N=CN2C3OC(COC(C=4C=CC=CC4)(C5=CC=C(OC)C=C5)C6=CC=C(OC)C=C6)C(OP(OC)N(C(C)C)C(C)C)C3O[Si](C)(C)C(C)(C)C)C=7C=CC=CC7
IUPAC Name: (2R,3R,4R,5R)-5-(6-benzamido-9H-purin-9-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-((tert-butyldimethylsilyl)oxy)tetrahydrofuran-3-yl methyl diisopropylphosphoramidite
InChI: InChI=1S/C51H65N6O8PSi/c1-34(2)57(35(3)4)66(61-10)64-44-42(31-62-51(37-21-17-14-18-22-37,38-23-27-40(59-8)28-24-38)39-25-29-41(60-9)30-26-39)63-49(45(44)65-67(11,12)50(5,6)7)56-33-54-43-46(52-32-53-47(43)56)55-48(58)36-19-15-13-16-20-36/h13-30,32-35,42,44-45,49H,31H2,1-12H3,(H,52,53,55,58)/t42-,44-,45-,49-,66?/m1/s1
Synonyms: 5'-O-DMTr-2'-O-TBDMS-A(Bz)-3'-Methoxy-phosphoramidite; 2'-tBDSilyl Adenosine (n-bz) methyl phosphoramidite

2'-OTBS G(iBu) OMe-amidite

Description: 2'-OTBS G(iBu) OMe-amidite is a reagent for synthesizing modified oligonucleotides. It features guanosine with a tert-butyldimethylsilyl (TBDMS) group at the 2'-position and an isobutyryl (ibu) group protecting the amino group. This modification enhances stability during synthesis and improves the resistance of oligonucleotides to degradation.
CAT: BRP-00832
CAS: 118684-41-6
Molecular Formula: C48H67N6O9PSi
Molecular Weight: 931.16
Purity: >95%
Appearance: White, off-white to faint yellow powder
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Storage: Store at -20 °C
InChIKey: GQXDBSFXGQUFKG-VCGWOZLGSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: O=C1N=C(NC(=O)C(C)C)NC2=C1N=CN2C3OC(COC(C=4C=CC=CC4)(C5=CC=C(OC)C=C5)C6=CC=C(OC)C=C6)C(OP(OC)N(C(C)C)C(C)C)C3O[Si](C)(C)C(C)(C)C
IUPAC Name: (2R,3R,4R,5R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-((tert-butyldimethylsilyl)oxy)-5-(2-isobutyramido-6-oxo-1,6-dihydro-9H-purin-9-yl)tetrahydrofuran-3-yl methyl diisopropylphosphoramidite
InChI: InChI=1S/C48H67N6O9PSi/c1-30(2)43(55)51-46-50-42-39(44(56)52-46)49-29-53(42)45-41(63-65(13,14)47(7,8)9)40(62-64(59-12)54(31(3)4)32(5)6)38(61-45)28-60-48(33-18-16-15-17-19-33,34-20-24-36(57-10)25-21-34)35-22-26-37(58-11)27-23-35/h15-27,29-32,38,40-41,45H,28H2,1-14H3,(H2,50,51,52,55,56)/t38-,40-,41-,45-,64?/m1/s1
Synonyms: Guanosine, 5'-O-[bis(4-methoxyphenyl)phenylmethyl]-2'-O-[(1,1-dimethylethyl)dimethylsilyl]-N-(2-methyl-1-oxopropyl)-, 3'-[methyl bis(1-methylethyl)phosphoramidite]; 5'-O-DMTr-2'-O-TBDMS-G(iBu)-3'-Methoxy-phosphoramidite; N2-isobutyryl-5'-O-(4,4'-dimethoxytrityl)-2'-O-(t-butyl-dimethylsilyl)-guanosine-3'-Methoxy-phosphoramidite; 2'-tBDSilyl Guanosine (n-ibu) methyl phosphoramidite

2'-OTBS 7,9-de-8-Thio-I amidite

Description: 2'-OTBS 7,9-de-8-Thio-I amidite is a modified phosphoramidite used in oligonucleotide synthesis. This modification can confer unique properties to oligonucleotides and is utilized in various applications in molecular biology and nucleic acid chemistry research.
CAT: BRP-00833
Molecular Formula: C47H61N4O8PSSi
Molecular Weight: 901.15
Purity: >98%
Appearance: Off-white solid
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Storage: Store at -20 °C
InChIKey: ICUUKKNWPLMJGN-SRYSXPHVSA-N
Solubility: Soluble in Acetonitrile, DMF
IUPAC Name: (2R,3R,4S,5R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-((tert-butyldimethylsilyl)oxy)-5-(4-oxo-3,4-dihydrothieno[3,4-d]pyrimidin-7-yl)tetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite
InChI: InChI=1S/C47H61N4O8PSSi/c1-31(2)51(32(3)4)60(56-27-15-26-48)58-41-39(57-43(42(41)59-62(10,11)46(5,6)7)44-40-38(29-61-44)45(52)50-30-49-40)28-55-47(33-16-13-12-14-17-33,34-18-22-36(53-8)23-19-34)35-20-24-37(54-9)25-21-35/h12-14,16-25,29-32,39,41-43H,15,27-28H2,1-11H3,(H,49,50,52)/t39-,41-,42-,43-,60?/m1/s1

2'-O-NMA MeC(iBu) amidite

Description: 2'-O-NMA MeC(iBu) amidite is a modified phosphoramidite used in oligonucleotide synthesis. The modifications enhance the stability and specificity of RNA molecules and are commonly used in various molecular biology applications.
CAT: BRP-00834
Molecular Formula: C47H61N6O10P
Molecular Weight: 901.01
Purity: >95%
Appearance: White, off-white to faint yellow powder
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Storage: Store at -20 °C
InChIKey: LAHCHMSIGMYPKH-LKYMEUIMSA-N
Solubility: Soluble in Acetonitrile, DMF
IUPAC Name: (2R,3R,4R,5R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-5-(4-isobutyramido-5-methyl-2-oxopyrimidin-1(2H)-yl)-4-(2-(methylamino)-2-oxoethoxy)tetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite
InChI: InChI=1S/C47H61N6O10P/c1-30(2)44(55)50-43-33(7)27-52(46(56)51-43)45-42(59-29-40(54)49-8)41(63-64(61-26-14-25-48)53(31(3)4)32(5)6)39(62-45)28-60-47(34-15-12-11-13-16-34,35-17-21-37(57-9)22-18-35)36-19-23-38(58-10)24-20-36/h11-13,15-24,27,30-32,39,41-42,45H,14,26,28-29H2,1-10H3,(H,49,54)(H,50,51,55,56)/t39-,41-,42-,45-,64?/m1/s1
Synonyms: 5'-DMT-2'-O-NMA-5-Me-C(iBu)-3'-CE-Phosphoramidite; [4-N-isobutyryl-5'-O-(4,4'-dimethoxytrityl)-2'-O-[2-(methylamino)-2-oxoethyl]-5-methylcytidine]-3'-[(2-cyanoethyl)-N,N-diisopropyl]phosphoramidite

PMO I Monomer

Description: PMO I monomer refers to a monomeric unit used in the synthesis of Phosphorodiamidate Morpholino Oligomers (PMOs). PMOs are synthetic nucleic acid analogs that are widely used in antisense therapy and molecular biology research. They are designed to hybridize with specific RNA sequences to modulate gene expression or function. The ''I'' monomer represents one of the nucleobase modifications that can be incorporated into PMOs to confer specific properties or enhance their binding affinity and specificity.
CAT: BRP-00835
CAS: 1044241-76-0
Molecular Formula: C31H32ClN6O4P
Molecular Weight: 619.06
Purity: >98%
Appearance: Off-white solid
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Storage: Store at -20 °C
Density: 1.38±0.1 g/cm3
Boiling Point: 761.0±70.0 °C at 760 mmHg
InChIKey: YCFWIWLBQZCQQO-RXDNIKEDSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: O=C1N=CNC2=C1N=CN2C3OC(COP(=O)(Cl)N(C)C)CN(C3)C(C=4C=CC=CC4)(C=5C=CC=CC5)C=6C=CC=CC6
IUPAC Name: ((2S,6R)-6-(6-oxo-1,6-dihydro-9H-purin-9-yl)-4-tritylmorpholin-2-yl)methyl dimethylphosphoramidochloridate
InChI: InChI=1S/C31H32ClN6O4P/c1-36(2)43(32,40)41-20-26-18-37(19-27(42-26)38-22-35-28-29(38)33-21-34-30(28)39)31(23-12-6-3-7-13-23,24-14-8-4-9-15-24)25-16-10-5-11-17-25/h3-17,21-22,26-27H,18-20H2,1-2H3,(H,33,34,39)/t26-,27+,43?/m0/s1
Synonyms: Phosphoramidochloridic acid, N,N-dimethyl-, [(2S,6R)-6-(1,6-dihydro-6-oxo-9H-purin-9-yl)-4-(triphenylmethyl)-2-morpholinyl]methyl ester; [(2S,6R)-6-(1,6-Dihydro-6-oxo-9H-purin-9-yl)-4-(triphenylmethyl)-2-morpholinyl]methyl N,N-dimethylphosphoramidochloridate

PMO I(NPE) Monomer

Description: PMO I(NPE) monomer refers to a monomeric unit used in the synthesis of Phosphorodiamidate Morpholino Oligomers (PMOs). PMOs are synthetic nucleic acid analogs used in antisense therapy and molecular biology research. The ''I(NPE)'' modification provides unique properties to the PMO, such as enhanced binding affinity or stability, and it can be used to target specific RNA sequences for therapeutic or research purposes.
CAT: BRP-00836
Molecular Formula: C39H39ClN7O6P
Molecular Weight: 768.21
Purity: >98%
Appearance: Yellow solid
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Storage: Store at -20 °C
InChIKey: FQWVICSCUXDSJM-SSGMMMFMSA-N
Solubility: Soluble in Acetonitrile, DMF
IUPAC Name: ((2S,6R)-6-(6-(4-nitrophenethoxy)-9H-purin-9-yl)-4-tritylmorpholin-2-yl)methyl dimethylphosphoramidochloridate
InChI: InChI=1S/C39H39ClN7O6P/c1-44(2)54(40,50)52-26-34-24-45(39(30-12-6-3-7-13-30,31-14-8-4-9-15-31)32-16-10-5-11-17-32)25-35(53-34)46-28-43-36-37(46)41-27-42-38(36)51-23-22-29-18-20-33(21-19-29)47(48)49/h3-21,27-28,34-35H,22-26H2,1-2H3/t34-,35+,54?/m0/s1

(R)-SNA MeC(Bz) amidite

Description: (R)-SNA MeC(Bz) amidite is a modified phosphoramidite used in oligonucleotide synthesis. It is used to introduce SNA backbone modifications and benzoyl-protected cytidine residues during solid-phase oligonucleotide synthesis. SNA modifications can enhance the stability and binding affinity of oligonucleotides, and benzoyl protection allows selective deprotection under mild conditions.
CAT: BRP-00837
Molecular Formula: C47H55N6O8P
Molecular Weight: 862.97
Purity: >95%
Appearance: Off-white solid
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Storage: Store at -20 °C
InChIKey: INDCRCPSOKWLRY-CEEWGNETSA-N
Solubility: Soluble in Acetonitrile, DMF
IUPAC Name: (R)-2-(2-(4-benzamido-5-methyl-2-oxopyrimidin-1(2H)-yl)acetamido)-3-(bis(4-methoxyphenyl)(phenyl)methoxy)propyl (2-cyanoethyl) diisopropylphosphoramidite
InChI: InChI=1S/C47H55N6O8P/c1-33(2)53(34(3)4)62(60-28-14-27-48)61-32-40(49-43(54)30-52-29-35(5)44(51-46(52)56)50-45(55)36-15-10-8-11-16-36)31-59-47(37-17-12-9-13-18-37,38-19-23-41(57-6)24-20-38)39-21-25-42(58-7)26-22-39/h8-13,15-26,29,33-34,40H,14,28,30-32H2,1-7H3,(H,49,54)(H,50,51,55,56)/t40-,62?/m1/s1
Synonyms: (R)-SNA C(Bz) amidite; (R)-SNA 5-Me-C(Bz) amidite

(R)-SNA G(iBu) amidite

Description: (R)-SNA G(iBu) amidite is a modified phosphoramidite used in oligonucleotide synthesis. It is used to introduce SNA backbone modifications and isobutyl-protected guanosine residues during solid-phase oligonucleotide synthesis. SNA modifications can enhance the stability and binding affinity of oligonucleotides, and isobutyl protection allows selective deprotection under mild conditions.
CAT: BRP-00838
Molecular Formula: C44H55N8O8P
Molecular Weight: 854.95
Purity: >95%
Appearance: Off-white solid
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Storage: Store at -20 °C
InChIKey: GIZOJVPZHAXHBF-KGRUAYADSA-N
Solubility: Soluble in Acetonitrile, DMF
IUPAC Name: (R)-3-(bis(4-methoxyphenyl)(phenyl)methoxy)-2-(2-(2-isobutyramido-6-oxo-1,6-dihydro-9H-purin-9-yl)acetamido)propyl (2-cyanoethyl) diisopropylphosphoramidite
InChI: InChI=1S/C44H55N8O8P/c1-29(2)41(54)49-43-48-40-39(42(55)50-43)46-28-51(40)25-38(53)47-35(27-60-61(59-24-12-23-45)52(30(3)4)31(5)6)26-58-44(32-13-10-9-11-14-32,33-15-19-36(56-7)20-16-33)34-17-21-37(57-8)22-18-34/h9-11,13-22,28-31,35H,12,24-27H2,1-8H3,(H,47,53)(H2,48,49,50,54,55)/t35-,61?/m1/s1
Related CAS: 1280548-97-1 (S-isomer)

LNA I amidite

Description: LNA I amidite is a phosphoramidite used in oligonucleotide synthesis to introduce LNA (Locked Nucleic Acid) modifications containing an inosine (I) nucleobase. LNA modifications enhance the stability and binding affinity of oligonucleotides to their complementary RNA or DNA strands. LNA I amidite allows for the synthesis of oligonucleotides containing inosine-modified LNA residues, which can be useful in various molecular biology applications, including antisense therapy, RNA structural studies, and gene expression modulation.
CAT: BRP-00839
Molecular Formula: C41H47N6O8P
Molecular Weight: 782.84
Purity: >98%
Appearance: Off-white solid
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Storage: Store at -20 °C
InChIKey: JVTYXZHEHLVHJW-NKXPIFMZSA-N
Solubility: Soluble in Acetonitrile, DMF
CanonicalSMILES: CC(C)N(C(C)C)P(OCCC#N)OC1C2C(OC1(CO2)COC(C3=CC=CC=C3)(C4=CC=C(C=C4)OC)C5=CC=C(C=C5)OC)N6C=NC7=C6N=CNC7=O
IUPAC Name: 3-[[(1R,3R,4R,7S)-1-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-3-(6-oxo-1H-purin-9-yl)-2,5-dioxabicyclo[2.2.1]heptan-7-yl]oxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile
InChI: InChI=1S/C41H47N6O8P/c1-27(2)47(28(3)4)56(53-22-10-21-42)55-36-35-39(46-26-45-34-37(46)43-25-44-38(34)48)54-40(36,23-51-35)24-52-41(29-11-8-7-9-12-29,30-13-17-32(49-5)18-14-30)31-15-19-33(50-6)20-16-31/h7-9,11-20,25-28,35-36,39H,10,22-24H2,1-6H3,(H,43,44,48)/t35-,36+,39-,40-,56?/m1/s1
Synonyms: (1R,3R,4R,7S)-1-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-3-(6-oxo-1,6-dihydro-9H-purin-9-yl)-2,5-dioxabicyclo[2.2.1]heptan-7-yl (2-cyanoethyl) diisopropylphosphoramidite

2'-MOE MeC(Ac) OMe-amidite

Description: 2'-MOE MeC(Ac) OMe-amidite is a modified phosphoramidite used in oligonucleotide synthesis to introduce 2'-methoxyethyl (2'-MOE) modifications into cytidine (C) residues. 2'-MOE MeC(Ac) OMe-amidite is crucial for the controlled synthesis of modified oligonucleotides, which find applications in molecular biology research, diagnostics, and therapeutics.
CAT: BRP-00840
Molecular Formula: C43H57N4O10P
Molecular Weight: 820.92
Purity: >95%
Appearance: Off-white solid
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Storage: Store at -20 °C
InChIKey: FKPROVDGFNABNE-KZQAAKLLSA-N
Solubility: Soluble in Acetonitrile, DMF
IUPAC Name: (2R,3R,4R,5R)-5-(4-acetamido-5-methyl-2-oxopyrimidin-1(2H)-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-(2-methoxyethoxy)tetrahydrofuran-3-yl methyl diisopropylphosphoramidite
InChI: InChI=1S/C43H57N4O10P/c1-28(2)47(29(3)4)58(53-10)57-38-37(56-41(39(38)54-25-24-50-7)46-26-30(5)40(44-31(6)48)45-42(46)49)27-55-43(32-14-12-11-13-15-32,33-16-20-35(51-8)21-17-33)34-18-22-36(52-9)23-19-34/h11-23,26,28-29,37-39,41H,24-25,27H2,1-10H3,(H,44,45,48,49)/t37-,38-,39-,41-,58?/m1/s1
* Only for research. Not suitable for any diagnostic or therapeutic use.

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