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CPGs for oligo synthesis

N Mix CPG (5'-DMT-[dA(Bz), dC(Ac), dG(iBu), T]-Suc-CPG); 1000 Å (BRP-02323)

Description: N Mix CPG (5'-DMT-[dA(Bz), dC(Ac), dG(iBu), T]-Suc-CPG); 1000 Å is a reagent used in the solid-phase synthesis of oligonucleotides to incorporate a randomized mixture of the four nucleosides: deoxyadenosine (dA) with benzoyl (Bz) protection, deoxycytidine (dC) with acetyl (Ac) protection, deoxyguanosine (dG) with isobutyryl (iBu) protection, and thymidine (T). These nucleosides are linked via a succinyl (Suc) linker to controlled pore glass (CPG) with a 1000 Å pore size. The reagent is designed for synthesizing randomized oligonucleotide sequences, enabling the creation of diverse sequence libraries. The 5'-DMT group protects the 5' end during synthesis, ensuring controlled and efficient oligonucleotide assembly.
CAT: BRP-02323
Appearance: White to off-white powder
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Storage: Store at 2-8 °C
Shipping: Room temperature.
Cleavage Conditions: Use concentrated ammonia for 90 min at 25°C or 30 min at 60°C, or 1:1 ammonia:methylamine (AMA) for 25 min at 25°C when using fast deprotecting amidites.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.

Pulsar 650 CPG; 1000 Å (BRP-02324)

Description: Pulsar 650 CPG is used for 3-Quasar 570-labeled oligonucleotides.
CAT: BRP-02324
Appearance: Orange powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 650
Cleavage Conditions: Use concentrated ammonia for 90 min at 25°C or 30 min at 60°C, or 1:1 ammonia:methylamine (AMA) for 25 min at 25°C when using fast deprotecting amidites.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Absorption Maximum (Lambda Max): 460

Pulsar 650 CPG; 500 Å (BRP-02325)

Description: Pulsar 650 CPG is used for 3-Quasar 570-labeled oligonucleotides.
CAT: BRP-02325
Appearance: Orange powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 650
Cleavage Conditions: Use concentrated ammonia for 90 min at 25°C or 30 min at 60°C, or 1:1 ammonia:methylamine (AMA) for 25 min at 25°C when using fast deprotecting amidites.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Absorption Maximum (Lambda Max): 460

Quasar 570 CPG; 500 Å (BRP-02326)

Description: Quasar 570 CPG is used for 3-Quasar 570 labelling of oligonucleotides.
CAT: BRP-02326
Appearance: Red powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 570
Cleavage Conditions: Use concentrated ammonia for 45 minutes at 25 °C.
Deprotection Conditions: When using fast deprotection amidites (such as C-Ac; G-DMF), use concentrated ammonia at 60°C for 1h or AMA for 30 min. When using standard amidites (such as C-Bz; G-iBu), please use concentrated ammonia at 60°C for 5h.
Absorption Maximum (Lambda Max): 550

Quasar 670 CPG; 1000 Å (BRP-02327)

Description: Quasar 670 CPG is used for 3-Quasar 670 labelling of oligonucleotides.
CAT: BRP-02327
Appearance: Blue powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 670
Cleavage Conditions: Use concentrated ammonia for 45 minutes at 25 °C.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Absorption Maximum (Lambda Max): 644

Quasar 670 CPG; 500 Å (BRP-02328)

Description: Quasar 670 CPG is used for 3-Quasar 670 labelling of oligonucleotides.
CAT: BRP-02328
Appearance: Blue powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 670
Cleavage Conditions: Use concentrated ammonia for 45 minutes at 25 °C.
Deprotection Conditions: When using fast deprotection amidites (such as C-Ac; G-DMF), use concentrated ammonia at 60°C for 1h or AMA for 30 min. When using standard amidites (such as C-Bz; G-iBu), please use concentrated ammonia at 60°C for 5h.
Absorption Maximum (Lambda Max): 644

Quasar 705 CPG; 500 Å (BRP-02329)

Description: Quasar 705 CPG is used for 3-Quasar 705 labelling of oligonucleotides.
CAT: BRP-02329
Appearance: Blue powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 709
Cleavage Conditions: Use concentrated ammonia for 45 minutes at 25 °C.
Deprotection Conditions: When using fast deprotection amidites (such as C-Ac; G-DMF), use concentrated ammonia at 60°C for 1h or AMA for 30 min. When using standard amidites (such as C-Bz; G-iBu), please use concentrated ammonia at 60°C for 5h.
Absorption Maximum (Lambda Max): 691

ROX-CPG (5'-DMT-mdC(TEG-ROX)-Phos-CPG); 500 Å (BRP-02330)

Description: ROX-CPG (5'-DMT-mdC(TEG-ROX)-Phos-CPG); 500 Å is a reagent used in the solid-phase synthesis of oligonucleotides that incorporates a 5(or 6)-carboxy-X-rhodamine (ROX) fluorescent dye. The reagent includes 5'-DMT (dimethoxytrityl) for protecting the 5' end, a methylated deoxycytidine (mdC) residue, and a triethylene glycol (TEG) spacer linked to the ROX dye. The phosphoramidite is attached to controlled pore glass (CPG) with a 500 Å pore size. This configuration allows for the incorporation of a fluorescent marker into oligonucleotides, which is commonly used in fluorescence-based assays and detection methods. The TEG spacer provides flexibility and reduces steric hindrance, improving the dye's interaction with other molecules or probes in assays.
CAT: BRP-02330
Appearance: Purple powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 602
Cleavage Conditions: Use t-butylamine/water (1:3) for 45 minutes at 25 °C. The use of ammonia must be avoided, as it will cause degradation of the ROX moiety.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Absorption Maximum (Lambda Max): 575

TAMRA-C9-Suc-CPG, 500 Å (BRP-02331)

Description: TAMRA-C9-Suc-CPG is used for 3-TAMRA (rhodamine) labelling of an oligonucleotide, with a C9 spacer.
CAT: BRP-02331
Appearance: Pink powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 576
Cleavage Conditions: Use t-butylamine/water (1:3) for 1 hour at 60°C. The use of ammonia must be avoided, as it will cause degradation of the TAMRA moiety.
Deprotection Conditions: When using fast deprotection amidites (such as C-Ac; G-DMF), use concentrated ammonia at 60°C for 1h or AMA for 30 min. When using standard amidites (such as C-Bz; G-iBu), please use concentrated ammonia at 60°C for 5h.
Absorption Maximum (Lambda Max): 555
Synonyms: O-DMT-N-(Tetramethylrhodamine-C6)-3-aminopropan-1;2-diol-Suc-CPG

TAMRA-Phos-CPG, 6-Carboxy Single Isomer (5'-DMT-mdC(TEG-TAMRA)-Phos-CPG); 1000 Å (BRP-02332)

Description: TAMRA-Phos-CPG, 6-Carboxy Single Isomer is used for 3-TAMRA (rhodamine) labelling of an oligonucleotide, with a TEG spacer.
CAT: BRP-02332
Appearance: Pink powder
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Storage: Store at -20 °C
Shipping: Frozen.
Fluorescence Maximum: 576
Synthesis Conditions: Synthesis can be performed on these supports according to standard procedures with deprotection and cleavage modifications noted. The phosphate linkage is susceptible to degradation if the Tamra CPG support is left at room temperature (25°C) over a 24 hour period. The subsequent cleavage may affect the overall yield.
Cleavage Conditions: Use t-butylamine/water (1:3) for 45 minutes at 25 °C. The use of ammonia or methylamine must be avoided, as it will cause degradation of the TAMRA moiety.
Deprotection Conditions: When using fast deprotecting amidites (eg. C-Ac; G-DMF; G-PAC) use t-butylamine/Water (1:3) for 6 hours at 60°C. When using standard amidites (eg. C-Bz; G-iBu) use t-butylamine/Water (1:3) overnight (12-15 hours) at 60°C.
Absorption Maximum (Lambda Max): 555

TAMRA-Phos-CPG, 6-Carboxy Single Isomer (5'-DMT-mdC(TEG-TAMRA)-Phos-CPG); 500 Å (BRP-02333)

Description: 5'-DMT-mdC(TEG-TAMRA)-Phos-CPG is used for 3-TAMRA (rhodamine) labelling of an oligonucleotide, with a TEG spacer.
CAT: BRP-02333
Appearance: Pink powder
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Storage: Store at -20 °C
Shipping: Frozen.
Fluorescence Maximum: 576
Synthesis Conditions: Synthesis can be performed on these supports according to standard procedures with deprotection and cleavage modifications noted. The phosphate linkage is susceptible to degradation if the Tamra CPG support is left at room temperature (25°C) over a 24 hour period. The subsequent cleavage may affect the overall yield.
Cleavage Conditions: Use t-butylamine/water (1:3) for 45 minutes at 25 °C. The use of ammonia or methylamine must be avoided, as it will cause degradation of the TAMRA moiety.
Deprotection Conditions: When using fast deprotecting amidites (eg. C-Ac; G-DMF; G-PAC) use t-butylamine/Water (1:3) for 6 hours at 60°C. When using standard amidites (eg. C-Bz; G-iBu) use t-butylamine/Water (1:3) overnight (12-15 hours) at 60°C.
Absorption Maximum (Lambda Max): 555

Universal Support-CPG (DMT-Ribose-Linker); 1000 Å (BRP-02334)

Description: Universal CPG solid support for oligonucleotide synthesis, with a ribose linker.
CAT: BRP-02334
Appearance: White to off-white powder
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Storage: Store at 2-8 °C
Shipping: Room temperature.
Synthesis Conditions: Include a nonsense base as the 3' terminal base for sequence entry systems.
Cleavage Conditions: For cleavage use ammonia/LiCl (15 mg LiCl in 1 mL concentrated aqueous ammonia, ca 0.1N LiCl) or methylamine/ammonia/LiCl for 90 minutes at 25°C. Filter off CPG support and collect supernant.
Deprotection Conditions: Deprotect supernant in ammonia/LiCl (15 mg LiCl in 1 mL concentrated aqueous ammonia) for 6 hours at 65°C or methylamine/ammonia/LiCl for about 3-4 hours at 65°C.
Synonyms: 5' CPG Succinyl 2'-O-Acetyl-3'-O-DMT Uridine & 5' CPG Succinyl 3'-O-Acetyl-2'-O-DMT Uridine

Universal Support-CPG (DMT-Ribose-Linker); 500 Å (BRP-02335)

Description: Universal CPG solid support for oligonucleotide synthesis, with a ribose linker.
CAT: BRP-02335
Appearance: White to off-white powder
Size Price Stock Quantity
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Storage: Store at 2-8 °C
Shipping: Room temperature.
Synthesis Conditions: Include a nonsense base as the 3' terminal base for sequence entry systems.
Cleavage Conditions: For cleavage use ammonia/LiCl (15 mg LiCl in 1 mL concentrated aqueous ammonia, ca 0.1N LiCl) or methylamine/ammonia/LiCl for 90 minutes at 25°C. Filter off CPG support and collect supernant.
Deprotection Conditions: Deprotect supernant in ammonia/LiCl (15 mg LiCl in 1 mL concentrated aqueous ammonia) for 6 hours at 65°C or methylamine/ammonia/LiCl for about 3-4 hours at 65°C.
Synonyms: 5' CPG Succinyl 2'-O-Acetyl-3'-O-DMT Uridine & 5' CPG Succinyl 3'-O-Acetyl-2'-O-DMT Uridine

dA-CPG; 1000 Å (BRP-02336)

Description: dA-CPG; 1000 Å is a reagent used in the solid-phase synthesis of oligonucleotides for incorporating deoxyadenosine (A) residues. It features a 5'-O-DMT (dimethoxytrityl) protective group, a benzoyl (Bz) protecting group on the adenine base, and a succinyl (Suc) linker that attaches the nucleoside to controlled pore glass (CPG) with a 1000 Å pore size. This configuration is designed for the efficient synthesis of longer DNA sequences, ensuring precise incorporation of deoxyadenosine with stable protection during the synthesis process.
CAT: BRP-02336
Appearance: White to Off-white Powder
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Storage: Store at -20 °C
Synonyms: 5'-Dimethoxytrityl-N-benzoyl-2'-deoxyAdenosine, 3'-succinoyl-long chain alkylamino-CPG 1000; dA-CPG 1000; dA-CPG 1000 (1 umol scale); 5'-O-DMT-2'-deoxy-A(Bz)-3'-suc-CPG 1000 Å; DMT-dA(Bz)-suc-CPG 1000 Å

dA-CPG; 2000 Å (BRP-02337)

Description: dA-CPG; 2000 Å is a reagent used in the solid-phase synthesis of oligonucleotides for incorporating deoxyadenosine (A) residues. It features a 5'-O-DMT (dimethoxytrityl) protective group, a benzoyl (Bz) protecting group on the adenine base, and a succinyl (Suc) linker that attaches the nucleoside to controlled pore glass (CPG) with a 2000 Å pore size. This configuration is designed for the efficient synthesis of longer DNA sequences, ensuring precise incorporation of deoxyadenosine with stable protection during the synthesis process.
CAT: BRP-02337
Appearance: White to Off-white Powder
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Storage: Store at -20 °C
Synonyms: 5'-Dimethoxytrityl-N-benzoyl-2'-deoxyAdenosine, 3'-succinoyl-long chain alkylamino-CPG 2000; dA-CPG 2000; 5'-O-DMT-2'-deoxy-A(Bz)-3'-suc-CPG 2000 Å; DMT-dA(Bz)-suc-CPG 2000 Å

dC-CPG; 1000 Å (BRP-02338)

Description: dC-CPG; 1000 Å is a reagent used in the solid-phase synthesis of oligonucleotides for incorporating deoxycytidine (C) residues. It includes a 5'-O-DMT (dimethoxytrityl) protective group, a benzoyl (Bz) group that protects the cytosine base during synthesis, and a succinyl (Suc) linker attached to controlled pore glass (CPG) with a 1000 Å pore size. This setup facilitates the efficient synthesis of longer DNA sequences with precise deoxycytidine incorporation, ensuring stability and ease of deprotection.
CAT: BRP-02338
Appearance: White to Off-white Powder
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Storage: Store at -20 °C
Synonyms: 5'-Dimethoxytrityl-N-benzoyl-2'-deoxyCytidine, 3'-succinoyl-long chain alkylamino-CPG 1000; dC-CPG 1000 (1 umol scale); dC-CPG 1000; 5'-O-DMT-2'-deoxy-C(Bz)-3'-suc-CPG 1000 Å; DMT-dC(Bz)-suc-CPG 1000 Å

dC-CPG; 2000 Å (BRP-02339)

Description: dC-CPG; 2000 Å is a reagent used in the solid-phase synthesis of oligonucleotides for incorporating deoxycytidine (C) residues. It includes a 5'-O-DMT (dimethoxytrityl) protective group, a benzoyl (Bz) group that protects the cytosine base during synthesis, and a succinyl (Suc) linker attached to controlled pore glass (CPG) with a 2000 Å pore size. This setup facilitates the efficient synthesis of longer DNA sequences with precise deoxycytidine incorporation, ensuring stability and ease of deprotection.
CAT: BRP-02339
Appearance: White to Off-white Powder
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Storage: Store at -20 °C
Synonyms: 5'-Dimethoxytrityl-N-benzoyl-2'-deoxyCytidine, 3'-succinoyl-long chain alkylamino-CPG 2000; dC-CPG 2000; 5'-O-DMT-2'-deoxy-C(Bz)-3'-suc-CPG 2000 Å; DMT-dC(Bz)-suc-CPG 2000 Å

dG-CPG; 1000 Å (BRP-02340)

Description: dG-CPG; 1000 Å is a reagent used in the solid-phase synthesis of oligonucleotides for incorporating N2-isobutyryl-deoxyguanosine (dG) residues. It includes a 5'-O-DMT (dimethoxytrityl) protective group, which protects the 5' end of the guanine base during synthesis. The N2-isobutyryl group protects the guanine's exocyclic amino group, and the 3'-suc (succinyl) linker connects the nucleoside to controlled pore glass (CPG) with a 2000 Å pore size. This configuration supports efficient synthesis and loading of long DNA sequences while ensuring precise incorporation and protection of guanine residues.
CAT: BRP-02340
Appearance: White to Off-white Powder
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Storage: Store at -20 °C
Synonyms: dG-CPG 1000 (1 umol scale); 5'-Dimethoxytrityl-N-isobutyryl-2'-deoxyGuanosine, 3'-succinoyl-long chain alkylamino-CPG 1000; dG-CPG 1000; 5'-O-DMT-2'-deoxy-G(iBu)-3'-suc-CPG 1000 Å; DMT-dG(iBu)-suc-CPG 1000 Å

dT-CPG; 1000 Å (BRP-02341)

Description: 5'-O-DMT-2'-deoxy-T-3'-suc-CPG 1000 Å is a reagent used in the solid-phase synthesis of oligonucleotides for incorporating thymidine (T) residues. It features a 5'-O-DMT (dimethoxytrityl) protective group to safeguard the 5' end of the thymidine during synthesis, and a succinyl (Suc) linker that attaches the nucleoside to controlled pore glass (CPG) with a 1000 Å pore size. The larger pore size is ideal for synthesizing longer DNA sequences, allowing for efficient incorporation of thymidine with high loading capacity and stability during the synthesis process.
CAT: BRP-02341
Appearance: White to Off-white Powder
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Storage: Store at -20 °C
Synonyms: dT-CPG 1000 (1 umol scale); 5'-Dimethoxytrityl-2'-deoxyThymidine, 3'-succinoyl-long chain alkylamino-CPG 1000; dT-CPG 1000; 5'-O-DMT-2'-deoxy-T-3'-suc-CPG 1000 Å; DMT-dT-suc-CPG 1000 Å

dT-CPG; 2000 Å (BRP-02342)

Description: 5'-O-DMT-2'-deoxy-T-3'-suc-CPG 2000 Å is a reagent used in the solid-phase synthesis of oligonucleotides for incorporating thymidine (T) residues. It features a 5'-O-DMT (dimethoxytrityl) protective group to safeguard the 5' end of the thymidine during synthesis, and a succinyl (Suc) linker that attaches the nucleoside to controlled pore glass (CPG) with a 2000 Å pore size. The larger pore size is ideal for synthesizing longer DNA sequences, allowing for efficient incorporation of thymidine with high loading capacity and stability during the synthesis process.
CAT: BRP-02342
Appearance: White to Off-white Powder
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Storage: Store at -20 °C
Synonyms: dT-CPG 2000; 5'-Dimethoxytrityl-2'-deoxyThymidine, 3'-succinoyl-long chain alkylamino-CPG 2000; 5'-O-DMT-2'-deoxy-T-3'-suc-CPG 2000 Å; DMT-dT-suc-CPG 2000 Å

What are CPGs?

Controlled Pore Glasses (CPGs) are made of silica and are widely used in solid phase synthesis reactions of oligonucleotides. CPG spheres have many irregular pore channels and are pore size stable. For spatial reasons, large pore sizes are suitable for the synthesis of long fragments, and short pore sizes are suitable for the synthesis of short fragments. BOC Sciences offers a wide range of CPGs for oligonucleotide synthesis to choose from, with pore sizes ranging from 300 Å-5000 Å. Groups linked to CPGs include TAMRA, DMT-Phosphate, Fluorescein, Aminopropyl, etc.

Different pore size CPGs can be used to synthesize oligonucleotide products with different loadings:

(1) 500 Å/600 Å pore size CPG products are suitable for oligonucleotide synthesis of < 35 mers. For example, therapeutic oligonucleotides can be synthesized at loads up to 100 μmol/g.

(2) 1000 Å pore size CPG products for >35 mers or highly modified oligonucleotide synthesis.

(3) 2000 Å/3000 Å pore size CPG products, suitable for oligonucleotide synthesis on a scale of 80 mers or more, with synthetic loads typically ranging from 10 to 20 μmol/g.

Examples of CPGs

Because tetramethylrhodamine (TAMRA) is not base-stable, procedures for cleaving and deprotecting labeled oligonucleotides must be carefully considered. For example, to simplify the preparation of TAMRA oligonucleotides, 3'-TAMRA CPG for 3' labeling and TAMRA-dT for in-sequence labeling are available.

Fluorescein CPG is traditionally used to add fluorescein labeling to the 3'-end. For example, 3'-(6-FAM) CPG effectively blocks polymerase extension and exonuclease digestion at the 3'-end.

The phosphate functional group on the surface of DMT-Phosphate-CPG usually carries a DMT protecting group. DMT is a commonly used protecting group that protects the phosphate group from non-specific reactions during nucleotide synthesis. The DMT protecting group can be easily removed at the end of the synthesis to expose the phosphate group for further modification. CPGs have a pore size and pore structure that can be tuned similar to that of conventional CPGs. This controllable pore size facilitates efficient solid-phase synthesis of oligonucleotides and ensures good attachment and stability of the phosphate functional groups.

Aminopropyl-CPG is a CPG modified by an aminopropyl functional group, and we can provide products with pore sizes ranging from 300 Å-2000 Å. The products can be used for the amination modification of nucleotides, and by introducing an amino functional group, the chemistry and reactivity of nucleotides can be extended.

Features of CPGs

The pore size and pore structure of CPGs can be tuned as needed, typically in the range of 3-30 nanometers. This controllable pore size and pore structure helps ensure efficient solid phase synthesis of oligonucleotides.

CPGs have a large amount of surface activity, providing enough binding sites to allow nucleotide immobilization and chemical reactions to take place during the synthesis process.

CPGs have good chemical stability and can be used under common nucleotide synthesis reaction conditions. They can tolerate synthesis conditions such as alkaline conditions, organic solvents, and high temperatures, thus ensuring high-quality oligonucleotide synthesis.

CPGs can be scaled and adjusted as needed for both small-scale research and large-scale industrial production.

After years of development, BOC Sciences has the expertise and experience to help you synthesize high-quality CPGs for oligo synthesis and accelerate the achievement of your research goals.

If you have any special requirements for CPGs products, please feel free to contact us. We look forward to working with you on attractive projects.

* Only for research. Not suitable for any diagnostic or therapeutic use.

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BOC Sciences is a leading provider of DNA and RNA products and services that meet the needs of researchers and pharmaceutical companies worldwide. Its broad product portfolio includes various types of oligonucleotides, DNA/RNA synthesis feedstocks, RNA interference tools, and advanced drug delivery systems, among others. Designed to promote cutting-edge research and innovative therapeutic solutions, at BOC Sciences you are sure to find the right product for you.

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