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CPGs for oligo synthesis

BHQ-1 CPG; Glycolate, 500 Å (BRP-02303)

Description: BHQ-1 CPG; Glycolate, 500 Å can be used to add the non-fluorescent quencher BHQ-1 dye to the 3' end of oligonucleotides.
CAT: BRP-02303
Appearance: Dark red powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Cleavage Conditions: When using fast deprotecting amidites use concentrated Ammonia for 45 min at 25 °C or Ammonia/ Methylamine (AMA) (1:1) for 15 min at 25 °C; or t-butylamine/H2O (1:3) for 90 min at 25 °C (TAMRA requires deprotection with TBA). When using standard amidites (eg. C-Bz, G-iBu) use concentrated Ammonia for 45 min at 25 °C.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Absorption Maximum (Lambda Max): 534

BHQ-1 T Linker Arm, CPG; 500 Å (BRP-02304)

Description: BHQ-1 T Linker Arm, CPG is used for oligonucleotides labeled with 3-BHQ-1 dT.
CAT: BRP-02304
Appearance: Dark red powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Cleavage Conditions: When using fast deprotecting amidites use concentrated Ammonia for 20 min at 25 °C or Ammonia/ Methylamine (AMA) (1:1) for 5 min at 25 °C; or t-butylamine/H2O (1:3) for 45 min at 25 °C (TAMRA requires deprotection with TBA). When using standard amidites (eg. C-Bz, G-iBu) use concentrated Ammonia for 20 min at 25 °C.
Deprotection Conditions: When using fast deprotection amidites (such as C-Ac; G-DMF), use concentrated ammonia at 60°C for 1h or AMA for 30 min. When using standard amidites (such as C-Bz; G-iBu), please use concentrated ammonia at 60°C for 5h.
Absorption Maximum (Lambda Max): 548

BHQ-2 CPG; Glycolate, 1000 Å (BRP-02305)

Description: BHQ-2 CPG; Glycolate is used to add the non-fluorescent quencher BHQ-2 to the 3' end of oligonucleotides.
CAT: BRP-02305
Appearance: Purple powder
Size Price Stock Quantity
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Storage: Store at -20 °C
Shipping: Room temperature.
Cleavage Conditions: When using fast deprotecting amidites use concentrated Ammonia for 45 min at 25 °C or Ammonia/ Methylamine (AMA) (1:1) for 15 min at 25 °C; or t-butylamine/H2O (1:3) for 90 min at 25 °C (TAMRA requires deprotection with TBA). When using standard amidites (eg. C-Bz, G-iBu) use concentrated Ammonia for 45 min at 25 °C.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Absorption Maximum (Lambda Max): 579

BHQ-2 CPG; Glycolate, 500 Å (BRP-02306)

Description: BHQ-2 CPG; Glycolate is used to add the non-fluorescent quencher BHQ-2 to the 3' end of oligonucleotides.
CAT: BRP-02306
Appearance: Purple powder
Size Price Stock Quantity
-- -- --
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Storage: Store at -20 °C
Shipping: Room temperature.
Cleavage Conditions: When using fast deprotecting amidites use concentrated Ammonia for 45 min at 25 °C or Ammonia/ Methylamine (AMA) (1:1) for 15 min at 25 °C; or t-butylamine/H2O (1:3) for 90 min at 25 °C (TAMRA requires deprotection with TBA). When using standard amidites (eg. C-Bz, G-iBu) use concentrated Ammonia for 45 min at 25 °C.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Absorption Maximum (Lambda Max): 579

BHQ-2 T Linker Arm, CPG; 500 Å (BRP-02307)

Description: BHQ-2 T Linker Arm, CPG is used for oligonucleotides labeled with 3-BHQ-2 dT.
CAT: BRP-02307
Appearance: Dark purple powder
Size Price Stock Quantity
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Storage: Store at -20 °C
Shipping: Room temperature.
Cleavage Conditions: When using fast deprotecting amidites use concentrated Ammonia for 20 min at 25 °C or Ammonia/ Methylamine (AMA) (1:1)for 5 min at 25 °C; or t-butylamine/H2O(1:3) for 45 min at 25 °C (TAMRA requires deprotection with TBA). When using standard amidites (eg. C-Bz, G-iBu) use concentrated Ammonia for 20 min at 25 °C.
Deprotection Conditions: When using fast deprotection amidites (such as C-Ac; G-DMF), use concentrated ammonia at 60°C for 1h or AMA for 30 min. When using standard amidites (such as C-Bz; G-iBu), please use concentrated ammonia at 60°C for 5h.
Absorption Maximum (Lambda Max): 592

BHQ-3 CPG; Glycolate, 1000 Å (BRP-02308)

Description: BHQ-3 CPG; Glycolate is used to add non-fluorescent quencher BHQ-3 to the 3' end of oligonucleotides.
CAT: BRP-02308
Appearance: Dark blue powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Synthesis Conditions: We recommend only using fast deprotecting amidites with this product due to the mild cleavage and deprotection conditions.
Deprotection Conditions: Cleave and deprotect in concentrated NH4OH for 1 hour at 60°C (after 1 hour at 60°C; degradation of product may occur).
Absorption Maximum (Lambda Max): 672

C16 CPG; 1000 Å (BRP-02309)

Description: C16 CPG is used to incorporate a C16 spacer at the 3' end of the oligonucleotide.
CAT: BRP-02309
Appearance: White to off-white powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Synthesis Conditions: Standard synthesis conditions
Cleavage Conditions: Use concentrated ammonia for 45 minutes at 25 °C or 1:1 ammonia:methylamine (AMA) for 15 minutes at 25 °C.
Synonyms: C16 CPG (1-DMT-2-Hexadecyl-Glyc-CPG); 1000 Å

C2 CPG; 500 Å (BRP-02310)

Description: C2 CPG is used to add C2 spacers to the 3' end of oligonucleotides.
CAT: BRP-02310
Appearance: White to off-white powder
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Storage: Store at 2-8 °C
Shipping: Room temperature.
Cleavage Conditions: Use concentrated ammonia for 45 minutes at 25 °C or 1:1 ammonia:methylamine (AMA) for 15 minutes at 25 °C.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Synonyms: C2 CPG (DMT-1,2-Etheyleneglycol-Suc-CPG); 500 Å

C3 CPG; 1000 Å (BRP-02311)

Description: C3 CPG is used to add a C3 spacer at the 3' end of an oligonucleotide.
CAT: BRP-02311
Appearance: White to off-white powder
Size Price Stock Quantity
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Storage: Store at 2-8 °C
Shipping: Room temperature.
Cleavage Conditions: Use concentrated ammonia for 90 min at 25°C or 30 min at 60°C, or 1:1 ammonia:methylamine (AMA) for 25 min at 25°C when using fast deprotecting amidites.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Synonyms: C3 CPG (DMT-1,3-Propanediol-Suc-CPG); 1000 Å

C6 CPG; 1000 Å (BRP-02312)

Description: C6 CPG is used to add a C6 spacer at the 3' end of an oligonucleotide.
CAT: BRP-02312
Appearance: White to off-white powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Cleavage Conditions: The glycolate spacer is more readily cleaved than the usual succinyl linkage. Cleave for 30-minutes at room temperature with concentrated NH4OH or 15 minutes at 60°C.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Synonyms: C6 CPG (DMT-1,6-Hexanediol-Glyc-CPG); 1000 Å

CAL Fluor Orange 560 CPG; 500 Å (BRP-02313)

Description: CAL Fluor Orange 560 CPG is a CPG for oligonucleotides labeled with 3-CAL Fluor Orange 560.
CAT: BRP-02313
Appearance: Pink powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 561
Deprotection Conditions: Cleave and deprotect the CAL dye labeled oligo in 2-Methoxyethylamine and MeOH (1:3) for 6 hours at 25°C or 3 hours at 60°C.The use of strong bases; such as concentrated ammonia; causes degradation of dye and should be avoided.
Absorption Maximum (Lambda Max): 540
Synonyms: CAL Fluor Orange 560 CPG (5'-DMT-T(C6-CAL Fluor Orange 560)-Glyc-CPG); 500 Å

CAL Fluor Red 610 CPG 500 Å (BRP-02314)

Description: CAL Fluor Red 610 CPG is a CPG for oligonucleotides labeled with 3-CAL Fluor Red 610.
CAT: BRP-02314
Appearance: Purple powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 610
Synthesis Conditions: Due to the mild deprotection conditions, we recommend using fast deprotecting amidites with this support.
Deprotection Conditions: Cleave and deprotect the CAL dye labeled oligo in 2-Methoxyethylamine and MeOH (1:3) for 6 hours at 25°C or 3 hours at 60°C.The use of strong bases; such as concentrated ammonia; causes degradation of dye and should be avoided.
Absorption Maximum (Lambda Max): 593
Synonyms: CAL Fluor Red 610 CPG (5'-DMT-T(C6-CAL Fluor Red 610)-Glyc-CPG); 500 Å

DABCYL-Suc-CPG; 1000 Å (BRP-02315)

Description: DABCYL-Suc-CPG is used for 3-labeling of oligonucleotides and has a dabcyl quencher molecule attached.
CAT: BRP-02315
Appearance: Orange powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Cleavage Conditions: Use concentrated ammonia for 90 minutes at 25°C.
Absorption Maximum (Lambda Max): 472
Synonyms: DABCYL-Suc-CPG (5'-DMT-mdC(TEG-DABCYL)-Suc-CPG); 1000 Å

DABCYL-Suc-CPG; 500 Å (BRP-02316)

Description: DABCYL-Suc-CPG is used for 3-labeling of oligonucleotides and has a dabcyl quencher molecule attached.
CAT: BRP-02316
Appearance: Orange powder
Size Price Stock Quantity
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Storage: Store at -20 °C
Shipping: Room temperature.
Cleavage Conditions: Use concentrated ammonia for 90 minutes at 25 °C.
Absorption Maximum (Lambda Max): 472
Synonyms: DABCYL-Suc-CPG (5'-DMT-mdC(TEG-DABCYL)-Suc-CPG); 500 Å

DMT-C3(Biotin)-CPG; 1000 Å (BRP-02317)

Description: DMT-C3(Biotin)-CPG is used to attach biotin with a C3 spacer to the 3' end of an oligonucleotide.
CAT: BRP-02317
Appearance: White to off-white powder
Size Price Stock Quantity
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Storage: Store at 2-8 °C
Shipping: Room temperature.
Cleavage Conditions: Use concentrated ammonia for 90 minutes at 25 °C or 1:1 ammonia:methylamine (AMA) for 25 minutes at 25 °C.

DMT-Phosphate-CPG; 1000 Å (BRP-02318)

Description: DMT-Phosphate-CPG is a CPG modified with a 3 phosphate on an oligonucleotide.
CAT: BRP-02318
Appearance: White to off-white powder
Size Price Stock Quantity
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Storage: Store at 2-8 °C
Shipping: Room temperature.
Cleavage Conditions: Use concentrated ammonia for 90 min at 25°C or 30 min at 60°C, or 1:1 ammonia:methylamine (AMA) for 25 min at 25°C when using fast deprotecting amidites.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Synonyms: DMT-Phosphate-CPG (O-DMT-2,2'-sulfonyldiethanol-Suc-CPG); 1000 Å

DMT-Phosphate-CPG; 500 Å (BRP-02319)

Description: DMT-Phosphate-CPG is a CPG modified with a 3 phosphate on an oligonucleotide.
CAT: BRP-02319
Appearance: White to off-white powder
Size Price Stock Quantity
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Storage: Store at -20 °C
Shipping: Room temperature.
Cleavage Conditions: Use concentrated ammonia for 90 min at 25°C or 30 min at 60°C, or 1:1 ammonia:methylamine (AMA) for 25 min at 25°C when using fast deprotecting amidites.
Deprotection Conditions: When using fast deprotecting amidites (e.g., C-Ac; G-DMF; G-PAC), please use concentrated ammonia for 1h or AMA for 30 min at 60°C. When using standard amidites (e.g., C-Bz; G-iBu), please use concentrated ammonia for 5h at 60°C.
Synonyms: DMT-Phosphate-CPG (O-DMT-2,2'-sulfonyldiethanol-Suc-CPG); 500 Å

Fluorescein-C3-CPG; 1000 Å (BRP-02320)

CAT: BRP-02320
Appearance: White to off-white powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 520
Cleavage Conditions: This support may be cleaved using concentrated NH4OH or t-butylamine/H2O(1:3) (TAMRA and other rhodamine-based dyes require deprotection with t-butylamine).
Deprotection Conditions: When using fast deprotection amidites (such as C-Ac; G-DMF), use concentrated ammonia at 60°C for 1h or AMA for 30 min. When using standard amidites (such as C-Bz; G-iBu), please use concentrated ammonia at 60°C for 5h.
Absorption Maximum (Lambda Max): 495

Fluorescein-C3-CPG; 500 Å (BRP-02321)

CAT: BRP-02321
Appearance: White to off-white powder
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Storage: Store at -20 °C
Shipping: Room temperature.
Fluorescence Maximum: 520
Cleavage Conditions: This support may be cleaved using concentrated NH4OH or t-butylamine/H2O(1:3) (TAMRA and other rhodamine-based dyes require deprotection with t-butylamine).
Deprotection Conditions: When using fast deprotection amidites (such as C-Ac; G-DMF), use concentrated ammonia at 60°C for 1h or AMA for 30 min. When using standard amidites (such as C-Bz; G-iBu), please use concentrated ammonia at 60°C for 5h.
Absorption Maximum (Lambda Max): 495

N Mix CPG (5'-DMT-[dA(Bz), dC(Ac), dG(dmf), T]-Glyc-CPG); 1000 Å (BRP-02322)

Description: N Mix CPG (5'-DMT-[dA(Bz), dC(Ac), dG(dmf), T]-Glyc-CPG); 1000 Å is a reagent used in the solid-phase synthesis of oligonucleotides to incorporate a randomized mixture of the four nucleosides: deoxyadenosine (dA) with benzoyl (Bz) protection, deoxycytidine (dC) with acetyl (Ac) protection, deoxyguanosine (dG) with dimethylformamidine (dmf) protection, and thymidine (T). The nucleosides are attached via a glycolate (Glyc) linker to controlled pore glass (CPG) with a 1000 Å pore size. This reagent is typically used in the synthesis of random-sequence oligonucleotides, allowing for the generation of diverse sequence libraries with each position having an equal probability of being any of the four bases. The 5'-DMT group protects the 5' end during synthesis, ensuring efficient and accurate oligonucleotide construction. Mixed base supports are used to create dNTP oligos used for mutation studies.
CAT: BRP-02322
Appearance: White to off-white powder
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Storage: Store at -20 °C
Shipping: Cold.
Cleavage Conditions: Use concentrated ammonia for 90 min at 25°C or 30 min at 60°C, or 1:1 ammonia:methylamine (AMA) for 25 min at 25°C when using fast deprotecting amidites.
Deprotection Conditions: When using fast deprotection amidites (such as C-Ac; G-DMF), use concentrated ammonia at 60°C for 1h or AMA for 30 min. When using standard amidites (such as C-Bz; G-iBu), please use concentrated ammonia at 60°C for 5h.

What are CPGs?

Controlled Pore Glasses (CPGs) are made of silica and are widely used in solid phase synthesis reactions of oligonucleotides. CPG spheres have many irregular pore channels and are pore size stable. For spatial reasons, large pore sizes are suitable for the synthesis of long fragments, and short pore sizes are suitable for the synthesis of short fragments. BOC Sciences offers a wide range of CPGs for oligonucleotide synthesis to choose from, with pore sizes ranging from 300 Å-5000 Å. Groups linked to CPGs include TAMRA, DMT-Phosphate, Fluorescein, Aminopropyl, etc.

Different pore size CPGs can be used to synthesize oligonucleotide products with different loadings:

(1) 500 Å/600 Å pore size CPG products are suitable for oligonucleotide synthesis of < 35 mers. For example, therapeutic oligonucleotides can be synthesized at loads up to 100 μmol/g.

(2) 1000 Å pore size CPG products for >35 mers or highly modified oligonucleotide synthesis.

(3) 2000 Å/3000 Å pore size CPG products, suitable for oligonucleotide synthesis on a scale of 80 mers or more, with synthetic loads typically ranging from 10 to 20 μmol/g.

Examples of CPGs

Because tetramethylrhodamine (TAMRA) is not base-stable, procedures for cleaving and deprotecting labeled oligonucleotides must be carefully considered. For example, to simplify the preparation of TAMRA oligonucleotides, 3'-TAMRA CPG for 3' labeling and TAMRA-dT for in-sequence labeling are available.

Fluorescein CPG is traditionally used to add fluorescein labeling to the 3'-end. For example, 3'-(6-FAM) CPG effectively blocks polymerase extension and exonuclease digestion at the 3'-end.

The phosphate functional group on the surface of DMT-Phosphate-CPG usually carries a DMT protecting group. DMT is a commonly used protecting group that protects the phosphate group from non-specific reactions during nucleotide synthesis. The DMT protecting group can be easily removed at the end of the synthesis to expose the phosphate group for further modification. CPGs have a pore size and pore structure that can be tuned similar to that of conventional CPGs. This controllable pore size facilitates efficient solid-phase synthesis of oligonucleotides and ensures good attachment and stability of the phosphate functional groups.

Aminopropyl-CPG is a CPG modified by an aminopropyl functional group, and we can provide products with pore sizes ranging from 300 Å-2000 Å. The products can be used for the amination modification of nucleotides, and by introducing an amino functional group, the chemistry and reactivity of nucleotides can be extended.

Features of CPGs

The pore size and pore structure of CPGs can be tuned as needed, typically in the range of 3-30 nanometers. This controllable pore size and pore structure helps ensure efficient solid phase synthesis of oligonucleotides.

CPGs have a large amount of surface activity, providing enough binding sites to allow nucleotide immobilization and chemical reactions to take place during the synthesis process.

CPGs have good chemical stability and can be used under common nucleotide synthesis reaction conditions. They can tolerate synthesis conditions such as alkaline conditions, organic solvents, and high temperatures, thus ensuring high-quality oligonucleotide synthesis.

CPGs can be scaled and adjusted as needed for both small-scale research and large-scale industrial production.

After years of development, BOC Sciences has the expertise and experience to help you synthesize high-quality CPGs for oligo synthesis and accelerate the achievement of your research goals.

If you have any special requirements for CPGs products, please feel free to contact us. We look forward to working with you on attractive projects.

* Only for research. Not suitable for any diagnostic or therapeutic use.

Our Products

BOC Sciences is a leading provider of DNA and RNA products and services that meet the needs of researchers and pharmaceutical companies worldwide. Its broad product portfolio includes various types of oligonucleotides, DNA/RNA synthesis feedstocks, RNA interference tools, and advanced drug delivery systems, among others. Designed to promote cutting-edge research and innovative therapeutic solutions, at BOC Sciences you are sure to find the right product for you.

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